RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 DFFAO00273 331 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 PEX12O00623 359 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 CTIFO43310 598 aaKnown RBP3.7□□□□□ -1.82
USP54-217ENST00000498213 WISP2O76076 250 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 CDK14O94921 469 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 NDUFB8O95169 186 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 SLC25A14O95258 325 aaPredicted RBP3.7□□□□□ -1.82
USP54-217ENST00000498213 MBD3O95983 291 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 RAF1P04049 648 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 ALPLP05186 524 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 FAM90A13PP0C7W8 464 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 FAM90A24PP0C7X0 464 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 T-ENOLP0DO92 83 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 RALBP11234 206 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 ZNF7P17097 686 aaPredicted RBP3.7□□□□□ -1.82
USP54-217ENST00000498213 CHRNB2P17787 502 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 TNFAIP3P21580 790 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 TNFSF4P23510 183 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 AK4P27144 223 aaPredicted RBP3.7□□□□□ -1.82
USP54-217ENST00000498213 GABRB3P28472 473 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 MIPP30301 263 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 TSFMP43897 325 aaKnown RBP3.7□□□□□ -1.82
USP54-217ENST00000498213 MAPK9P45984 424 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 NR2C2P49116 596 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 HTR6P50406 440 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 TDGF1P3P51864 188 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 CASP6P55212 293 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 RPL7AP62424 266 aaKnown RBP3.7□□□□□ -1.82
USP54-217ENST00000498213 IFI35P80217 286 aaPredicted RBP3.7□□□□□ -1.82
USP54-217ENST00000498213 MYL5Q02045 173 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 PPIDQ08752 370 aaKnown RBP3.7□□□□□ -1.82
USP54-217ENST00000498213 TRAF2Q12933 501 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 PRKAA1Q13131 559 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 SNTB1Q13884 538 aaKnown RBP3.7□□□□□ -1.82
USP54-217ENST00000498213 SEMA3AQ14563 771 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 PDK1Q15118 436 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 MAPKAPK3Q16644 382 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 SLC5A12Q1EHB4 618 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 FILIP1LQ4L180 1135 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 Q5PR19 223 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 LRRC38Q5VT99 294 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 IRAK1BP1Q5VVH5 260 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 TAF3Q5VWG9 929 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 RUSC1-AS1Q66K80 236 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 HIBCHQ6NVY1 386 aaPredicted RBP3.7□□□□□ -1.82
USP54-217ENST00000498213 IGFL2Q6UWQ7 119 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 C3P1Q6ZMU1 363 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 RBM43Q6ZSC3 357 aaKnown RBP3.7□□□□□ -1.82
USP54-217ENST00000498213 AMZ2Q86W34 360 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 CDC20BQ86Y33 519 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 RFX6Q8HWS3 928 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 CREBRFQ8IUR6 639 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 ZBTB2Q8N680 514 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 BCORP1Q8N888 145 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 GPATCH11Q8N954 259 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 FAM47BQ8NA70 645 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 MCUQ8NE86 351 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 SRFBP1Q8NEF9 429 aaKnown RBP3.7□□□□□ -1.82
USP54-217ENST00000498213 DDHD1Q8NEL9 900 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 GOT1L1Q8NHS2 421 aaPredicted RBP3.7□□□□□ -1.82
USP54-217ENST00000498213 FAF2Q96CS3 445 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 CXorf40BQ96DE9 158 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 THOC3Q96J01 351 aaKnown RBP3.7□□□□□ -1.82
USP54-217ENST00000498213 FAR2Q96K12 515 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 TTC25Q96NG3 672 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 OR6C1Q96RD1 312 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 WDR77Q9BQA1 342 aaPredicted RBP3.7□□□□□ -1.82
USP54-217ENST00000498213 BPIFA3Q9BQP9 254 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 SYT11Q9BT88 431 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 SNRNP25Q9BV90 132 aaKnown RBP3.7□□□□□ -1.82
USP54-217ENST00000498213 RIOK2Q9BVS4 552 aaKnown RBP3.7□□□□□ -1.82
USP54-217ENST00000498213 NUP85Q9BW27 656 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 AP1M1Q9BXS5 423 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 PITPNM3Q9BZ71 974 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 UCK2Q9BZX2 261 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 CLSTN2Q9H4D0 955 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 KIR3DX1Q9H7L2 352 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 WDR54Q9H977 334 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 LRTM1Q9HBL6 345 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 PCDH9Q9HC56 1237 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 FAM207AQ9NSI2 230 aaPredicted RBP3.7□□□□□ -1.82
USP54-217ENST00000498213 ANO10Q9NW15 660 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 WWOXQ9NZC7 414 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 MSRB1Q9NZV6 116 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 CWC15Q9P013 229 aaKnown RBP3.7□□□□□ -1.82
USP54-217ENST00000498213 UVRAGQ9P2Y5 699 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 SEC14L3Q9UDX4 400 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 KCNN3Q9UGI6 736 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 SNX7Q9UNH6 387 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 SNX10Q9Y5X0 201 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 SEC16AO15027 2179 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 EPPK1P58107 5090 aaKnown RBP3.69□□□□□ -1.82
USP54-217ENST00000498213 TMEM272A0A1B0GTI8 110 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 A0A1W2PQ72 361 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 C5orf60A6NFR6 353 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 MGAT4DA6NG13 374 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 PDZK1P1A8MUH7 402 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 J3KTA2 159 aa3.69□□□□□ -1.82
USP54-217ENST00000498213 PES1O00541 588 aaKnown RBP3.69□□□□□ -1.82
USP54-217ENST00000498213 ZNHIT1O43257 154 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms