RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 CSF3RQ99062 836 aa13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 EPB41L4BQ9H329 900 aa13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 CALHM2Q9HA72 323 aa13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 C20orf96Q9NUD7 363 aaPredicted RBP13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 EIF3LQ9Y262 564 aaKnown RBP13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 CHCHD2Q9Y6H1 151 aaPredicted RBP13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 KCNE2Q9Y6J6 123 aa13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 CAPN6Q9Y6Q1 641 aa13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 A0A0G2JN53 185 aa13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 TRIM64A6NGJ6 449 aa13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 TRIM64BA6NI03 449 aa13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 SDR42E2A6NKP2 422 aa13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 ERN1O75460 977 aaKnown RBP13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 C1QAP02745 245 aa13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 FPR1P21462 350 aa13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 GDF1P27539 372 aa13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 IL2P60568 153 aa13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 KIF5AQ12840 1032 aa13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 TBCELQ5QJ74 424 aa13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 PRAMEF20Q5VT98 475 aa13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 VASNQ6EMK4 673 aa13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 SYDE1Q6ZW31 735 aaPredicted RBP13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 OR2L5Q8NG80 312 aa13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 ZNF597Q96LX8 424 aa13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 NDNQ99608 321 aa13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 RBM24Q9BX46 236 aaKnown RBP13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 XAB2Q9HCS7 855 aaKnown RBP13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 GALNT8Q9NY28 637 aa13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 CNOT11Q9UKZ1 510 aaKnown RBP13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 TESMINQ9Y4I5 508 aa13.06□□□□□ -0.32
PRPF40A-211ENST00000493468 EXPH5Q8NEV8 1989 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 ANKRD33BA6NCL7 494 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 TRIM3O75382 744 aaPredicted RBP13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 CLEC3AO75596 197 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 ETHE1O95571 254 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 IGKV3-11P04433 115 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 HPNP05981 417 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 FBXO45P0C2W1 286 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 TNNI3P19429 210 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 MTTPP55157 894 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 CDKN2DP55273 166 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 TRIM40Q6P9F5 258 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 SBSNQ6UWP8 590 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 TMIGD1Q6UXZ0 262 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 MED12LQ86YW9 2145 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 C9orf40Q8IXQ3 194 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 C2CD4AQ8NCU7 369 aaPredicted RBP13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 GABPB2Q8TAK5 448 aaPredicted RBP13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 ZFP3Q96NJ6 502 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 TRIB1Q96RU8 372 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 DOHHQ9BU89 302 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 SFXN3Q9BWM7 321 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 PITHD1Q9GZP4 211 aaPredicted RBP13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 UBQLN3Q9H347 655 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 LYRM4Q9HD34 91 aa13.05□□□□□ -0.32
PRPF40A-211ENST00000493468 CASKO14936 926 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 GUCA1CO95843 209 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 TBX6O95947 436 aaPredicted RBP13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 C8BP07358 591 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 TMIGD3P0DMS9 266 aaPredicted RBP13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 COX7A2P14406 83 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 CERS1P27544 350 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 SERPINB3P29508 390 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 MAGEA3P43357 314 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 PCYT1AP49585 367 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 CDK9P50750 372 aaKnown RBP13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 AGFG1P52594 562 aaKnown RBP13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 IGLV3-21P80748 117 aaPredicted RBP13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 PPP1R3AQ16821 1122 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 HSP90AA5PQ58FG0 334 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 ABHD17CQ6PCB6 329 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 C20orf204Q6ZNR8 217 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 MCUQ8NE86 351 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 OR10G3Q8NGC4 313 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 JSRP1Q96MG2 331 aaPredicted RBP13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 RUNDC3BQ96NL0 473 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 CCL19Q99731 98 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 GSX2Q9BZM3 304 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 REXO4Q9GZR2 422 aaKnown RBP13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 NT5DC2Q9H857 520 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 COPS7BQ9H9Q2 264 aaPredicted RBP13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 NDRG3Q9UGV2 375 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 CAMK2AQ9UQM7 478 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 SLC22A14Q9Y267 594 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 NPFFR2Q9Y5X5 522 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 CUBNO60494 3623 aa13.04□□□□□ -0.32
PRPF40A-211ENST00000493468 HEATR5AQ86XA9 2040 aa13.03□□□□□ -0.32
PRPF40A-211ENST00000493468 LDB3O75112 727 aa13.03□□□□□ -0.32
PRPF40A-211ENST00000493468 C1GALT1C1LP0DN25 315 aa13.03□□□□□ -0.32
PRPF40A-211ENST00000493468 GNAZP19086 355 aa13.03□□□□□ -0.32
PRPF40A-211ENST00000493468 PLA2G16P53816 162 aa13.03□□□□□ -0.32
PRPF40A-211ENST00000493468 CBLBQ13191 982 aa13.03□□□□□ -0.32
PRPF40A-211ENST00000493468 ACKR1Q16570 336 aa13.03□□□□□ -0.32
PRPF40A-211ENST00000493468 NTRK2Q16620 822 aa13.03□□□□□ -0.32
PRPF40A-211ENST00000493468 RBM20Q5T481 1227 aaKnown RBP13.03□□□□□ -0.32
PRPF40A-211ENST00000493468 ANKRD22Q5VYY1 191 aa13.03□□□□□ -0.32
PRPF40A-211ENST00000493468 SLCO4C1Q6ZQN7 724 aa13.03□□□□□ -0.32
PRPF40A-211ENST00000493468 RNF10Q8N5U6 811 aaKnown RBP13.03□□□□□ -0.32
PRPF40A-211ENST00000493468 C9orf106Q8NAJ2 232 aa13.03□□□□□ -0.32
PRPF40A-211ENST00000493468 FAM13CQ8NE31 585 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms