RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 CRB3Q9BUF7 120 aa16.17■□□□□ 0.18
LIME1-208ENST00000493265 DPY30Q9C005 99 aa16.17■□□□□ 0.18
LIME1-208ENST00000493265 GPN2Q9H9Y4 310 aaPredicted RBP16.17■□□□□ 0.18
LIME1-208ENST00000493265 MIEF1Q9NQG6 463 aa16.17■□□□□ 0.18
LIME1-208ENST00000493265 LANCL2Q9NS86 450 aa16.17■□□□□ 0.18
LIME1-208ENST00000493265 C14orf105Q9NVL8 296 aa16.17■□□□□ 0.18
LIME1-208ENST00000493265 C3orf18Q9UK00 162 aa16.17■□□□□ 0.18
LIME1-208ENST00000493265 TRIM33Q9UPN9 1127 aa16.17■□□□□ 0.18
LIME1-208ENST00000493265 FARSAQ9Y285 508 aaKnown RBP16.17■□□□□ 0.18
LIME1-208ENST00000493265 PCDHA9Q9Y5H5 950 aa16.17■□□□□ 0.18
LIME1-208ENST00000493265 GPR45Q9Y5Y3 372 aa16.17■□□□□ 0.18
LIME1-208ENST00000493265 MRPS18BQ9Y676 258 aaKnown RBP16.17■□□□□ 0.18
LIME1-208ENST00000493265 SCN2AQ99250 2005 aa16.17■□□□□ 0.18
LIME1-208ENST00000493265 IGLV3-12A0A075B6K2 115 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 C1orf226A1L170 272 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 ERVH48-1M5A8F1 160 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 CLDN4O14493 209 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 PRMT3O60678 531 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 ERAL1O75616 437 aaKnown RBP16.16■□□□□ 0.18
LIME1-208ENST00000493265 FAM107AO95990 144 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 RAB40ALP0C0E4 278 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 C8orf89P0DMQ9 161 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 ACPPP15309 386 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 IL10P22301 178 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 HPCAL1P37235 193 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 FOLR3P41439 243 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 TMPRSS3P57727 454 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 UFM1P61960 85 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 CBX1P83916 185 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 ACTN3Q08043 901 aaPredicted RBP16.16■□□□□ 0.18
LIME1-208ENST00000493265 SRSF6Q13247 344 aaKnown RBP16.16■□□□□ 0.18
LIME1-208ENST00000493265 OR52E8Q6IFG1 317 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 IKBIPQ70UQ0 350 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 PIGWQ7Z7B1 504 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 TICAM1Q8IUC6 712 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 ZNF595Q8IYB9 648 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.16■□□□□ 0.18
LIME1-208ENST00000493265 KCNE4Q8WWG9 221 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 TSLPQ969D9 159 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 PTCHD1Q96NR3 888 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 SPSB2Q99619 263 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 TGIF2Q9GZN2 237 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 VN1R1Q9GZP7 353 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 SLC26A1Q9H2B4 701 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 WDR54Q9H977 334 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 IL17BQ9UHF5 180 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 PADI2Q9Y2J8 665 aa16.16■□□□□ 0.18
LIME1-208ENST00000493265 COPG1Q9Y678 874 aaKnown RBP16.16■□□□□ 0.18
LIME1-208ENST00000493265 VSTM2BA6NLU5 285 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 IDSB3KWA1 339 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 FGF17O60258 216 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 COX7A2P14406 83 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 DRD2P14416 443 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 LIFP15018 202 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 DDCP20711 480 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 GSTM5P46439 218 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 EMP2P54851 167 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 CLDN8P56748 225 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 FOLH1Q04609 750 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 STX4Q12846 297 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 CLN3Q13286 438 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 GSTA3Q16772 222 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 ZNF750Q32MQ0 723 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 PGS1Q32NB8 556 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 MIER2Q8N344 545 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 OR7A2PQ8NGA2 310 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 STON2Q8WXE9 905 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 TANKQ92844 425 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 PPCDCQ96CD2 204 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 KLHL29Q96CT2 875 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 ACTL8Q9H568 366 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 REEP4Q9H6H4 257 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 NECTIN3Q9NQS3 549 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 SH3BP4Q9P0V3 963 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 NXT1Q9UKK6 140 aaKnown RBP16.15■□□□□ 0.18
LIME1-208ENST00000493265 UTS2RQ9UKP6 389 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 TCFL5Q9UL49 500 aa16.15■□□□□ 0.18
LIME1-208ENST00000493265 EXO1Q9UQ84 846 aaKnown RBP16.15■□□□□ 0.18
LIME1-208ENST00000493265 NUP210LQ5VU65 1888 aa16.14■□□□□ 0.17
LIME1-208ENST00000493265 C21orf140B9A014 251 aa16.14■□□□□ 0.17
LIME1-208ENST00000493265 NDUFAB1O14561 156 aa16.14■□□□□ 0.17
LIME1-208ENST00000493265 SCAMP2O15127 329 aaKnown RBP16.14■□□□□ 0.17
LIME1-208ENST00000493265 KLK10O43240 276 aa16.14■□□□□ 0.17
LIME1-208ENST00000493265 CTNSO60931 367 aa16.14■□□□□ 0.17
LIME1-208ENST00000493265 KLF7O75840 302 aaPredicted RBP16.14■□□□□ 0.17
LIME1-208ENST00000493265 CD63P08962 238 aa16.14■□□□□ 0.17
LIME1-208ENST00000493265 FURINP09958 794 aa16.14■□□□□ 0.17
LIME1-208ENST00000493265 PRPS1L1P21108 318 aa16.14■□□□□ 0.17
LIME1-208ENST00000493265 PIK3R1P27986 724 aa16.14■□□□□ 0.17
LIME1-208ENST00000493265 PTPN4P29074 926 aa16.14■□□□□ 0.17
LIME1-208ENST00000493265 OTX2P32243 289 aa16.14■□□□□ 0.17
LIME1-208ENST00000493265 EFNA3P52797 238 aa16.14■□□□□ 0.17
LIME1-208ENST00000493265 RHAGQ02094 409 aa16.14■□□□□ 0.17
LIME1-208ENST00000493265 UBAP2LQ14157 1087 aaKnown RBP16.14■□□□□ 0.17
LIME1-208ENST00000493265 NSDHLQ15738 373 aa16.14■□□□□ 0.17
LIME1-208ENST00000493265 PRSS53Q2L4Q9 553 aa16.14■□□□□ 0.17
LIME1-208ENST00000493265 PDCD4Q53EL6 469 aaKnown RBP16.14■□□□□ 0.17
LIME1-208ENST00000493265 GKAP1Q5VSY0 366 aaPredicted RBP16.14■□□□□ 0.17
LIME1-208ENST00000493265 SLC48A1Q6P1K1 146 aa16.14■□□□□ 0.17
LIME1-208ENST00000493265 PAOXQ6QHF9 649 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms