RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 SPACA9Q96E40 222 aaPredicted RBP14.84□□□□□ -0.03
USP48-210ENST00000489108 SERINC2Q96SA4 455 aa14.84□□□□□ -0.03
USP48-210ENST00000489108 RBM24Q9BX46 236 aaKnown RBP14.84□□□□□ -0.03
USP48-210ENST00000489108 IKZF3Q9UKT9 509 aa14.84□□□□□ -0.03
USP48-210ENST00000489108 KCNE2Q9Y6J6 123 aa14.84□□□□□ -0.03
USP48-210ENST00000489108 A0A088AWK7 358 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 CD8B2A6NJW9 211 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 GOLGA8MH3BSY2 632 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 H2AFYO75367 372 aaKnown RBP14.83□□□□□ -0.04
USP48-210ENST00000489108 TRAPPC6AO75865 159 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 ACSL3O95573 720 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 TBX6O95947 436 aaPredicted RBP14.83□□□□□ -0.04
USP48-210ENST00000489108 IL18BPO95998 194 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 MLNP12872 115 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 ZNF10P21506 573 aaPredicted RBP14.83□□□□□ -0.04
USP48-210ENST00000489108 TBL3Q12788 808 aaKnown RBP14.83□□□□□ -0.04
USP48-210ENST00000489108 GPS1Q13098 491 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 CBLBQ13191 982 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 SF3B4Q15427 424 aaKnown RBP eCLIP14.83□□□□□ -0.04
USP48-210ENST00000489108 VASNQ6EMK4 673 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 TMIGD1Q6UXZ0 262 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 SYDE1Q6ZW31 735 aaPredicted RBP14.83□□□□□ -0.04
USP48-210ENST00000489108 PM20D2Q8IYS1 436 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 GPATCH11Q8N954 259 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 C2CD4AQ8NCU7 369 aaPredicted RBP14.83□□□□□ -0.04
USP48-210ENST00000489108 OR10G3Q8NGC4 313 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 NUBPLQ8TB37 319 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 SLC22A8Q8TCC7 542 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 PERPQ96FX8 193 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 SENP5Q96HI0 755 aaPredicted RBP14.83□□□□□ -0.04
USP48-210ENST00000489108 DESI2Q9BSY9 194 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 FAM167BQ9BTA0 163 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 DOHHQ9BU89 302 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 PRDM14Q9GZV8 571 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 TSPY26PQ9H489 355 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 CNIH4Q9P003 139 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 COPS7AQ9UBW8 275 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 CNOT11Q9UKZ1 510 aaKnown RBP14.83□□□□□ -0.04
USP48-210ENST00000489108 EIF3LQ9Y262 564 aaKnown RBP14.83□□□□□ -0.04
USP48-210ENST00000489108 SLC6A5Q9Y345 797 aa14.83□□□□□ -0.04
USP48-210ENST00000489108 CHCHD2Q9Y6H1 151 aaPredicted RBP14.83□□□□□ -0.04
USP48-210ENST00000489108 CHD3Q12873 2000 aaKnown RBP14.83□□□□□ -0.04
USP48-210ENST00000489108 MXRA5Q9NR99 2828 aa14.82□□□□□ -0.04
USP48-210ENST00000489108 MBD3L4A6NDZ8 208 aaPredicted RBP14.82□□□□□ -0.04
USP48-210ENST00000489108 MBD3L3A6NE82 208 aaPredicted RBP14.82□□□□□ -0.04
USP48-210ENST00000489108 MBD3L5A6NJ08 208 aaPredicted RBP14.82□□□□□ -0.04
USP48-210ENST00000489108 CRLF1O75462 422 aa14.82□□□□□ -0.04
USP48-210ENST00000489108 C1GALT1C1LP0DN25 315 aa14.82□□□□□ -0.04
USP48-210ENST00000489108 MTTPP55157 894 aa14.82□□□□□ -0.04
USP48-210ENST00000489108 FOXF2Q12947 444 aa14.82□□□□□ -0.04
USP48-210ENST00000489108 SERTAD2Q14140 314 aa14.82□□□□□ -0.04
USP48-210ENST00000489108 RCN2Q14257 317 aa14.82□□□□□ -0.04
USP48-210ENST00000489108 LUZP2Q86TE4 346 aa14.82□□□□□ -0.04
USP48-210ENST00000489108 C9orf40Q8IXQ3 194 aa14.82□□□□□ -0.04
USP48-210ENST00000489108 SLC15A4Q8N697 577 aa14.82□□□□□ -0.04
USP48-210ENST00000489108 C9orf106Q8NAJ2 232 aa14.82□□□□□ -0.04
USP48-210ENST00000489108 OR2L5Q8NG80 312 aa14.82□□□□□ -0.04
USP48-210ENST00000489108 MBD3L2Q8NHZ7 208 aaPredicted RBP14.82□□□□□ -0.04
USP48-210ENST00000489108 ANKRD9Q96BM1 317 aaPredicted RBP14.82□□□□□ -0.04
USP48-210ENST00000489108 REXO4Q9GZR2 422 aaKnown RBP14.82□□□□□ -0.04
USP48-210ENST00000489108 GALNT8Q9NY28 637 aa14.82□□□□□ -0.04
USP48-210ENST00000489108 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.81□□□□□ -0.04
USP48-210ENST00000489108 RNF212BA8MTL3 300 aa14.81□□□□□ -0.04
USP48-210ENST00000489108 HRKO00198 91 aa14.81□□□□□ -0.04
USP48-210ENST00000489108 TRIM3O75382 744 aaPredicted RBP14.81□□□□□ -0.04
USP48-210ENST00000489108 ERN1O75460 977 aaKnown RBP14.81□□□□□ -0.04
USP48-210ENST00000489108 AHSGP02765 367 aa14.81□□□□□ -0.04
USP48-210ENST00000489108 ENO2P09104 434 aaPredicted RBP14.81□□□□□ -0.04
USP48-210ENST00000489108 TMIGD3P0DMS9 266 aaPredicted RBP14.81□□□□□ -0.04
USP48-210ENST00000489108 BMP7P18075 431 aa14.81□□□□□ -0.04
USP48-210ENST00000489108 PDAP1Q13442 181 aaKnown RBP14.81□□□□□ -0.04
USP48-210ENST00000489108 SLBPQ14493 270 aaKnown RBP eCLIP14.81□□□□□ -0.04
USP48-210ENST00000489108 ADPRMQ3LIE5 342 aa14.81□□□□□ -0.04
USP48-210ENST00000489108 TRIM40Q6P9F5 258 aa14.81□□□□□ -0.04
USP48-210ENST00000489108 ABHD17CQ6PCB6 329 aa14.81□□□□□ -0.04
USP48-210ENST00000489108 SBSNQ6UWP8 590 aa14.81□□□□□ -0.04
USP48-210ENST00000489108 SLCO4C1Q6ZQN7 724 aa14.81□□□□□ -0.04
USP48-210ENST00000489108 MCUQ8NE86 351 aa14.81□□□□□ -0.04
USP48-210ENST00000489108 TTLQ8NG68 377 aa14.81□□□□□ -0.04
USP48-210ENST00000489108 GABPB2Q8TAK5 448 aaPredicted RBP14.81□□□□□ -0.04
USP48-210ENST00000489108 DOK4Q8TEW6 326 aa14.81□□□□□ -0.04
USP48-210ENST00000489108 WDYHV1Q96HA8 205 aa14.81□□□□□ -0.04
USP48-210ENST00000489108 SIGLEC10Q96LC7 697 aa14.81□□□□□ -0.04
USP48-210ENST00000489108 SERPINB12Q96P63 405 aa14.81□□□□□ -0.04
USP48-210ENST00000489108 COPS7BQ9H9Q2 264 aaPredicted RBP14.81□□□□□ -0.04
USP48-210ENST00000489108 CALHM2Q9HA72 323 aa14.81□□□□□ -0.04
USP48-210ENST00000489108 XAB2Q9HCS7 855 aaKnown RBP14.81□□□□□ -0.04
USP48-210ENST00000489108 PRDM7Q9NQW5 492 aa14.81□□□□□ -0.04
USP48-210ENST00000489108 C6orf203Q9P0P8 240 aaPredicted RBP14.81□□□□□ -0.04
USP48-210ENST00000489108 ZKSCAN5Q9Y2L8 839 aa14.81□□□□□ -0.04
USP48-210ENST00000489108 DSCAMO60469 2012 aa14.81□□□□□ -0.04
USP48-210ENST00000489108 ANK3Q12955 4377 aaKnown RBP14.81□□□□□ -0.04
USP48-210ENST00000489108 MED12Q93074 2177 aa14.8□□□□□ -0.04
USP48-210ENST00000489108 ANKDD1BA6NHY2 528 aa14.8□□□□□ -0.04
USP48-210ENST00000489108 CLEC3AO75596 197 aa14.8□□□□□ -0.04
USP48-210ENST00000489108 CNOT4O95628 575 aaKnown RBP14.8□□□□□ -0.04
USP48-210ENST00000489108 IGKV3-11P04433 115 aa14.8□□□□□ -0.04
USP48-210ENST00000489108 FBXO45P0C2W1 286 aa14.8□□□□□ -0.04
USP48-210ENST00000489108 SERPINB3P29508 390 aa14.8□□□□□ -0.04
USP48-210ENST00000489108 CPA2P48052 419 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms