RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 DYTNA2CJ06 578 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 GOLGA6L10A6NI86 522 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 TTLL8A6PVC2 850 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 C17orf105B2RV13 164 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 AZIN1O14977 448 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 NPHS1O60500 1241 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 ZIC2O95409 532 aaPredicted RBP13.78□□□□□ -0.2
USP4-212ENST00000486549 UROSP10746 265 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 ETV4P43268 484 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 SERPINB4P48594 390 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 MLLT10P55197 1068 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 ACSM2AQ08AH3 577 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 CASP8Q14790 479 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 TERF2Q15554 542 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 PLEKHN1Q494U1 663 aaPredicted RBP13.78□□□□□ -0.2
USP4-212ENST00000486549 TNFAIP8L3Q5GJ75 292 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 ACSM2BQ68CK6 577 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 OR52E8Q6IFG1 317 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 CRLF3Q8IUI8 442 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 NUDCD3Q8IVD9 361 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 BEST3Q8N1M1 668 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 TMEM132CQ8N3T6 1108 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 SLC5A8Q8N695 610 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 PPP1R14CQ8TAE6 165 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 AGR3Q8TD06 166 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 ELP5Q8TE02 316 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 CHTF18Q8WVB6 975 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 PPWD1Q96BP3 646 aaKnown RBP13.78□□□□□ -0.2
USP4-212ENST00000486549 ZNF354BQ96LW1 612 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 DGAT2Q96PD7 388 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 TRMOQ9BU70 441 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 EBPLQ9BY08 206 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 STMN4Q9H169 189 aaPredicted RBP13.78□□□□□ -0.2
USP4-212ENST00000486549 SSU72Q9NP77 194 aaKnown RBP13.78□□□□□ -0.2
USP4-212ENST00000486549 STMN3Q9NZ72 180 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 MAP10Q9P2G4 905 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 VTI1BQ9UEU0 232 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 ACTL7BQ9Y614 415 aa13.78□□□□□ -0.2
USP4-212ENST00000486549 GNG14A0A1W2PPG7 69 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 SYNDIG1LA6NDD5 238 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 TMEM233B4DJY2 109 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 PGRMC2O15173 223 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 PCDH7O60245 1069 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 MAN1A2O60476 641 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 SORBS2O94875 1100 aaKnown RBP13.77□□□□□ -0.21
USP4-212ENST00000486549 WDPCPO95876 746 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 COX7A2P14406 83 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 CLCN2P51788 898 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 IGLV3-21P80748 117 aaPredicted RBP13.77□□□□□ -0.21
USP4-212ENST00000486549 PLIN5Q00G26 463 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 MEP1AQ16819 746 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 PRR30Q53SZ7 412 aaPredicted RBP13.77□□□□□ -0.21
USP4-212ENST00000486549 SPIN4Q56A73 249 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 ARL13AQ5H913 290 aaPredicted RBP13.77□□□□□ -0.21
USP4-212ENST00000486549 ACER2Q5QJU3 275 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 NDUFAF5Q5TEU4 345 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 Q6ZS92 163 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 MMP21Q8N119 569 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 ANKRD42Q8N9B4 389 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 Q8NA96 180 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 APCDD1LQ8NCL9 501 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 CATSPER1Q8NEC5 780 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 OR14A16Q8NHC5 309 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 DOK4Q8TEW6 326 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 THAP3Q8WTV1 239 aaPredicted RBP13.77□□□□□ -0.21
USP4-212ENST00000486549 PTPMT1Q8WUK0 201 aaPredicted RBP13.77□□□□□ -0.21
USP4-212ENST00000486549 DAZLQ92904 295 aaKnown RBP13.77□□□□□ -0.21
USP4-212ENST00000486549 VMP1Q96GC9 406 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 NPAS2Q99743 824 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 DEFB126Q9BYW3 111 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 OR8D2Q9GZM6 311 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.77□□□□□ -0.21
USP4-212ENST00000486549 CDCP1Q9H5V8 836 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 EML4Q9HC35 981 aaKnown RBP13.77□□□□□ -0.21
USP4-212ENST00000486549 MCM8Q9UJA3 840 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 PTGDR2Q9Y5Y4 395 aa13.77□□□□□ -0.21
USP4-212ENST00000486549 TM9SF1O15321 606 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 OR10H2O60403 315 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 GUCY1B2O75343 617 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 ZWINTO95229 277 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 GPR75O95800 540 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 CHEK2O96017 543 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 ALOX15P16050 662 aaPredicted RBP13.76□□□□□ -0.21
USP4-212ENST00000486549 PIK3R1P27986 724 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 TIA1P31483 386 aaKnown RBP eCLIP13.76□□□□□ -0.215e-6■■■■□ 20.5
USP4-212ENST00000486549 STT3AP46977 705 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 ALDH9A1P49189 494 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 RAE1P78406 368 aaKnown RBP13.76□□□□□ -0.21
USP4-212ENST00000486549 MPP2Q14168 576 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 ZNF169Q14929 603 aaPredicted RBP13.76□□□□□ -0.21
USP4-212ENST00000486549 SH2D4BQ5SQS7 431 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 KANK2Q63ZY3 851 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 H3F3CQ6NXT2 135 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 DGAT2L6Q6ZPD8 337 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 ZNF321PQ8N8H1 164 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 CDC26Q8NHZ8 85 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 TM4SF18Q96CE8 201 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 RBM18Q96H35 190 aaKnown RBP13.76□□□□□ -0.21
USP4-212ENST00000486549 PAIP2Q9BPZ3 127 aaKnown RBP13.76□□□□□ -0.21
USP4-212ENST00000486549 TMBIM4Q9HC24 238 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms