RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SLC15A5A6NIM6 579 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 ANHXE9PGG2 379 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 RNF103O00237 685 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 CHUKO15111 745 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 SIGLEC5O15389 551 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 STBD1O95210 358 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 GAS8O95995 478 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 CALCAP01258 141 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 EPOP01588 193 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 ATP6V1E1P36543 226 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 EVCP57679 992 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 YBEYP58557 167 aaPredicted RBP2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 GABPAQ06546 454 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 GIT2Q14161 759 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 GK2Q14410 553 aaPredicted RBP2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 SPHARQ15513 63 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 C3AR1Q16581 482 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 PRR30Q53SZ7 412 aaPredicted RBP2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 FHL5Q5TD97 284 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 LYPLAL1Q5VWZ2 237 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 TMEM64Q6YI46 380 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 TOM1L2Q6ZVM7 507 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 CYP4V2Q6ZWL3 525 aaPredicted RBP2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 ZNF410Q86VK4 478 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 CATSPER3Q86XQ3 398 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 OR4N5Q8IXE1 308 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 PEX5LQ8IYB4 626 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 ZNF444Q8N0Y2 327 aaPredicted RBP2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 FBXW8Q8N3Y1 598 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 ARL10Q8N8L6 244 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 SPATA18Q8TC71 538 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 GPR148Q8TDV2 347 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 UBTD2Q8WUN7 234 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 HAS2Q92819 552 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 CFAP36Q96G28 342 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 ZNF274Q96GC6 653 aaPredicted RBP2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 ZNF597Q96LX8 424 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 ERGIC2Q96RQ1 377 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 TRIM7Q9C029 511 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 THAP9Q9H5L6 903 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 ZNF665Q9H7R5 613 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 VIPAS39Q9H9C1 493 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 FAM212BQ9NTI7 297 aaPredicted RBP2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 HMG20BQ9P0W2 317 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 TSPAN16Q9UKR8 245 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 TEX264Q9Y6I9 313 aa2.4□□□□□ -2.03
CCDC88A-212ENST00000474059 IGHV4-30-2A0A087WSY4 118 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 ZNF840PA6NDX5 716 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 TCP10L2B9ZVM9 353 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 G3V2L1 256 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 GALR3O60755 368 aaPredicted RBP2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 CPNE6O95741 557 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 ANGPTL1O95841 491 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 RPLP0P05388 317 aaKnown RBP2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 EZRP15311 586 aaKnown RBP2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 SELEP16581 610 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 UGT1A6P19224 532 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 CYP3A5P20815 502 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 GPR183P32249 361 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 NT5C2P49902 561 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 TNFSF10P50591 281 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 BACE1P56817 501 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 GFPT1Q06210 699 aaPredicted RBP2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 ZNF177Q13360 481 aaPredicted RBP2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 RFTN1Q14699 578 aaPredicted RBP2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 CDC37Q16543 378 aaPredicted RBP2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 STX1AQ16623 288 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 SNRNP48Q6IEG0 339 aaKnown RBP2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 CD164L2Q6UWJ8 174 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 Q71RC1 249 aaPredicted RBP2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 RABEPKQ7Z6M1 372 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 NLRP14Q86W24 1093 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 STHQ8IWL8 128 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 ELMOD1Q8N336 334 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 RTL3Q8N8U3 475 aaKnown RBP2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 SIDT2Q8NBJ9 832 aaKnown RBP2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 OR5M9Q8NGP3 310 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 C8orf46Q8TAG6 207 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 PRCCQ92733 491 aaPredicted RBP2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 ZNF560Q96MR9 790 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 SPATA13Q96N96 652 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 SSX3Q99909 188 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 RBM24Q9BX46 236 aaKnown RBP2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 TNFRSF19Q9NS68 423 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 ZCCHC3Q9NUD5 404 aaKnown RBP2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 PLEK2Q9NYT0 353 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 ZNF319Q9P2F9 582 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 FETUBQ9UGM5 382 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 BAIAP2L1Q9UHR4 511 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 EXOC7Q9UPT5 735 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 ERVK-19Q9WJR5 959 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 KCNK6Q9Y257 313 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 TDRKHQ9Y2W6 561 aaKnown RBP2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 MRPS18CQ9Y3D5 142 aaKnown RBP2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 OR1A2Q9Y585 309 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 UMODL1Q5DID0 1318 aa2.39□□□□□ -2.03
CCDC88A-212ENST00000474059 GPRASP1Q5JY77 1395 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 SYCE3A1L190 88 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 A8MU76 341 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms