RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ZNF750Q32MQ0 723 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 TMEM211Q6ICI0 200 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 OPN5Q6U736 354 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 GK5Q6ZS86 529 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 GPR180Q86V85 440 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 MYLK4Q86YV6 388 aaPredicted RBP15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 ZCCHC7Q8N3Z6 543 aaKnown RBP15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 RNF175Q8N4F7 328 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 TANKQ92844 425 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 SDCCAG3Q96C92 435 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 SCYL1Q96KG9 808 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 SGCZQ96LD1 299 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 DGAT2Q96PD7 388 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 TTTY12Q9BZ98 90 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 DEFB127Q9H1M4 99 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 TP63Q9H3D4 680 aaPredicted RBP15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 RPF2Q9H7B2 306 aaKnown RBP15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 ZDHHC11Q9H8X9 412 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 ZDHHC18Q9NUE0 388 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 PHF11Q9UIL8 331 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 HRH3Q9Y5N1 445 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 EML6Q6ZMW3 1958 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 A0A096LPK6 155 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 A0A0G2JMM0 328 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 A0A1W2PPB8 328 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 A0A1W2PRS3 328 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 ESYT3A0FGR9 886 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 KIR3DP1A8MWS1 328 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 H0YIV9 168 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 PLPP1O14494 284 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 DYRK3O43781 588 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 KLK8O60259 260 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 UGDHO60701 494 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 PDE9AO76083 593 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 GLSO94925 669 aaPredicted RBP15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 KLHL2O95198 593 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 CNR1P21554 472 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 TLX1P31314 330 aaPredicted RBP15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 PHEXP78562 749 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 SLC7A5Q01650 507 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 CKAP4Q07065 602 aaKnown RBP15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 PCBP2Q15366 365 aaKnown RBP eCLIP15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 MPEG1Q2M385 716 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 NDUFAF5Q5TEU4 345 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 KLC3Q6P597 504 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 SLC22A16Q86VW1 577 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 OR4N5Q8IXE1 308 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 ZNF295-AS1Q8N0V1 137 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 MARVELD2Q8N4S9 558 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 NUBPLQ8TB37 319 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 CA5BP1Q8WTZ4 195 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 REPS1Q96D71 796 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 MRRFQ96E11 262 aaKnown RBP15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 RBM18Q96H35 190 aaKnown RBP15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 SENP5Q96HI0 755 aaPredicted RBP15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 ART5Q96L15 291 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 LURAP1Q96LR2 239 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 MTERF1Q99551 399 aaKnown RBP15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 SPOCK3Q9BQ16 436 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 FAM173AQ9BQD7 235 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 ACTR8Q9H981 624 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 PDZD2O15018 2839 aa15.34■□□□□ 0.05
CCDC28B-204ENST00000469003 HIVEP1P15822 2718 aa15.33■□□□□ 0.05
CCDC28B-204ENST00000469003 MTORP42345 2549 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 LRRC14BA6NHZ5 514 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 FAM166BA8MTA8 275 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 G3V3Y1 287 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 ZNF354AO60765 605 aaPredicted RBP15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 IGKV3-11P04433 115 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 PTX3P26022 381 aaPredicted RBP15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 SSTR2P30874 369 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 PHBP35232 272 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 PIK3CGP48736 1102 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 HNRNPH2P55795 449 aaKnown RBP15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 RPS13P62277 151 aaKnown RBP15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 PLIN5Q00G26 463 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 FOLH1Q04609 750 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 GTF2H2Q13888 395 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 UAP1Q16222 522 aaPredicted RBP15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 PIGGQ5H8A4 983 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 C18orf63Q68DL7 685 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 C8orf74Q6P047 294 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 GTF2H2CQ6P1K8 395 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 METTL2BQ6P1Q9 378 aaKnown RBP15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 ACBD4Q8NC06 268 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 ASB5Q8WWX0 329 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 GPR78Q96P69 363 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 ZNF717Q9BY31 904 aaPredicted RBP15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 ENKD1Q9H0I2 346 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 SACM1LQ9NTJ5 587 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 ATG4BQ9Y4P1 393 aa15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 TNPO3Q9Y5L0 923 aaKnown RBP15.33■□□□□ 0.04
CCDC28B-204ENST00000469003 ZNF407Q9C0G0 2248 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 PROM1O43490 865 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 IGHG3P01860 377 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 ALDOAP04075 364 aaKnown RBP15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 P04436 131 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 ALOX15P16050 662 aaPredicted RBP15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 TYK2P29597 1187 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 BUD31P41223 144 aaPredicted RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms