RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PSD3Q9NYI0 1048 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 TNFRSF10DQ9UBN6 386 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 SEC14L3Q9UDX4 400 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 SNX6Q9UNH7 406 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 ABCA4P78363 2273 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 A0A088AWK7 358 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 NSG1A0A0A6YYJ2 146 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 A0A0G2JN53 185 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 TMEM120BA0PK00 339 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 BIRC5O15392 142 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 SASH3O75995 380 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 HEXBP07686 556 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 CYC1P08574 325 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 ICAM2P13598 275 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 ZNF10P21506 573 aaPredicted RBP11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 PTX3P26022 381 aaPredicted RBP11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 HMOX2P30519 316 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 SERPINB5P36952 375 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 NEK2P51955 445 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 ARFIP1P53367 373 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 PLA2G16P53816 162 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 SLC18A1P54219 525 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 BTN3A2P78410 334 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 MAT1AQ00266 395 aaKnown RBP11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 LTBQ06643 244 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 MFAP5Q13361 173 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 CUL3Q13618 768 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 INAQ16352 499 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 FAAH2Q6GMR7 532 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 ABHD17CQ6PCB6 329 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 ISLR2Q6UXK2 745 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 NDUFAF7Q7L592 441 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 NUDCD3Q8IVD9 361 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 ZC3H7AQ8IWR0 971 aaKnown RBP11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 KBTBD2Q8IY47 623 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 GOLGA6L1Q8N7Z2 621 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 OR5T3Q8NGG3 340 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 OR6Y1Q8NGX8 325 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 OR51Q1Q8NH59 317 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 SPATA3Q8NHX4 192 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 THOC3Q96J01 351 aaKnown RBP11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 FAR2Q96K12 515 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 ATP6V1G3Q96LB4 118 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 QRFPRQ96P65 431 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 KCNC2Q96PR1 638 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 CENPKQ9BS16 269 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 OR51B5Q9H339 312 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 CLK4Q9HAZ1 481 aaKnown RBP11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 PRDM7Q9NQW5 492 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 FARSBQ9NSD9 589 aaKnown RBP11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 HCN3Q9P1Z3 774 aa11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 RPH3AQ9Y2J0 694 aaPredicted RBP11.16□□□□□ -0.62
SQSTM1-206ENST00000466342 LOC102723996A0A087X1L8 192 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 MANBAO00462 879 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 B3GALT2O43825 422 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 ALOX12BO75342 701 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 SH3BGRLO75368 114 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 BMP10O95393 424 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 PDYNP01213 254 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 KRT6AP02538 564 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 KRT6BP04259 564 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 IL10P22301 178 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 XCR1P46094 333 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 KRT6CP48668 564 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 RAP1GDS1P52306 607 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 MTTPP55157 894 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 AP2B1P63010 937 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 OLR1P78380 273 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 ZNF33BQ06732 778 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 GALNT1Q10472 559 aaPredicted RBP11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 RCN2Q14257 317 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 TTMPQ5BVD1 217 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 SGO1Q5FBB7 561 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 TCHHL1Q5QJ38 904 aaPredicted RBP11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 FAM219BQ5XKK7 198 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 TMEM205Q6UW68 189 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 LINC00696Q6ZRV3 163 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 RIPOR1Q6ZS17 1223 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 ZCCHC23Q6ZST2 131 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 UBE3DQ7Z6J8 389 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 ANKRD42Q8N9B4 389 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 DNAJB8Q8NHS0 232 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 METTL6Q8TCB7 284 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 SELENOMQ8WWX9 145 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 RGMAQ96B86 450 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 C8orf44Q96CB5 159 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 OR1F2PQ96R84 312 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 KCNA7Q96RP8 456 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 SERINC2Q96SA4 455 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 SERPINI1Q99574 410 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 TBCDQ9BTW9 1192 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 NPLQ9BXD5 320 aaPredicted RBP11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 ROGDIQ9GZN7 287 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 ACBD3Q9H3P7 528 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 COPS7BQ9H9Q2 264 aaPredicted RBP11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 BRF2Q9HAW0 419 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 ZNF160Q9HCG1 818 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 DLL4Q9NR61 685 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 RIC8BQ9NVN3 520 aa11.15□□□□□ -0.62
SQSTM1-206ENST00000466342 ABI3Q9P2A4 366 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms