RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 SLAMF1Q13291 335 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 ABRAXAS2Q15018 415 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 FAM219BQ5XKK7 198 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 CYP20A1Q6UW02 462 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 SCIMPQ6UWF3 145 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 RIPOR1Q6ZS17 1223 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 PAGE2Q7Z2X7 111 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 ZCCHC7Q8N3Z6 543 aaKnown RBP16.61■□□□□ 0.25
COL7A1-205ENST00000465238 PSMF1Q92530 271 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 MRPL1Q9BYD6 325 aaKnown RBP16.61■□□□□ 0.25
COL7A1-205ENST00000465238 DDX31Q9H8H2 851 aaKnown RBP16.61■□□□□ 0.25
COL7A1-205ENST00000465238 LANCL2Q9NS86 450 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 C19orf25Q9UFG5 118 aaPredicted RBP16.61■□□□□ 0.25
COL7A1-205ENST00000465238 FBXW2Q9UKT8 454 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 FIS1Q9Y3D6 152 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 ARHGAP10A1A4S6 786 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 SERTM1A2A2V5 107 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 OR2W5A6NFC9 320 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 HMGB1P1B2RPK0 211 aaPredicted RBP16.6■□□□□ 0.25
COL7A1-205ENST00000465238 TMEM114B3SHH9 223 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 PRMT3O60678 531 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 SASH3O75995 380 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 HSPA4LO95757 839 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 FGF4P08620 206 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 CPN2P22792 545 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 GRK2P25098 689 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 COL8A1P27658 744 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 PER3P56645 1201 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 WDR4P57081 412 aaKnown RBP16.6■□□□□ 0.25
COL7A1-205ENST00000465238 AP2B1P63010 937 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 EEF1A2Q05639 463 aaKnown RBP16.6■□□□□ 0.25
COL7A1-205ENST00000465238 NSDHLQ15738 373 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 IMPG1Q17R60 797 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 TTMPQ5BVD1 217 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 CLEC6AQ6EIG7 209 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 TMEM205Q6UW68 189 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 CLYBLQ8N0X4 340 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 METTL4Q8N3J2 472 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 BCORP1Q8N888 145 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 FAM47BQ8NA70 645 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 PLPP5Q8NEB5 264 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 CATSPER1Q8NEC5 780 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 OR1N1Q8NGS0 311 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 OR6Y1Q8NGX8 325 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 BRIX1Q8TDN6 353 aaKnown RBP16.6■□□□□ 0.25
COL7A1-205ENST00000465238 PTCHD1Q96NR3 888 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 MAPKAP1Q9BPZ7 522 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 SLX1AQ9BQ83 275 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 ZNF717Q9BY31 904 aaPredicted RBP16.6■□□□□ 0.25
COL7A1-205ENST00000465238 TNFRSF12AQ9NP84 129 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 LYARQ9NX58 379 aaKnown RBP16.6■□□□□ 0.25
COL7A1-205ENST00000465238 MS4A12Q9NXJ0 267 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 KCMF1Q9P0J7 381 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 PTGFRNQ9P2B2 879 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 PHF11Q9UIL8 331 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 ADAM29Q9UKF5 820 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 OSGIN2Q9Y236 505 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 TRAF6Q9Y4K3 522 aa16.6■□□□□ 0.25
COL7A1-205ENST00000465238 LRBAP50851 2863 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 LOC102723996A0A087X1L8 192 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 TRAV17A0A0B4J275 112 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 EEDO75530 441 aaKnown RBP16.59■□□□□ 0.25
COL7A1-205ENST00000465238 KLK1P06870 262 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 ICAM2P13598 275 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 CHN1P15882 459 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 BGNP21810 368 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 TLX1P31314 330 aaPredicted RBP16.59■□□□□ 0.25
COL7A1-205ENST00000465238 DCTP40126 519 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 TNFSF10P50591 281 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 BTG2P78543 158 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 RHAGQ02094 409 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 STX3Q13277 289 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 INAQ16352 499 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 SPDYAQ5MJ70 313 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 SH2D4BQ5SQS7 431 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 CCNYL2Q5T2Q4 361 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 ZNF787Q6DD87 383 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 GPR180Q86V85 440 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 ZNF595Q8IYB9 648 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 HAS2Q92819 552 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 ACPTQ9BZG2 426 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 ZNF700Q9H0M5 742 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 PRDM9Q9NQV7 894 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 PRTFDC1Q9NRG1 225 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 OLAHQ9NV23 265 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 MMACHCQ9Y4U1 282 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 CPAMD8Q8IZJ3 1885 aa16.59■□□□□ 0.25
COL7A1-205ENST00000465238 A0A0A6YYD5 115 aa16.58■□□□□ 0.24
COL7A1-205ENST00000465238 CYR61O00622 381 aa16.58■□□□□ 0.24
COL7A1-205ENST00000465238 LRRTM2O43300 516 aa16.58■□□□□ 0.24
COL7A1-205ENST00000465238 SNUPNO95149 360 aaKnown RBP16.58■□□□□ 0.24
COL7A1-205ENST00000465238 GBAP04062 536 aa16.58■□□□□ 0.24
COL7A1-205ENST00000465238 FAM58BPP0C7Q3 252 aa16.58■□□□□ 0.24
COL7A1-205ENST00000465238 EFNA3P52797 238 aa16.58■□□□□ 0.24
COL7A1-205ENST00000465238 HSD17B7P56937 341 aa16.58■□□□□ 0.24
COL7A1-205ENST00000465238 ABCE1P61221 599 aaKnown RBP16.58■□□□□ 0.24
COL7A1-205ENST00000465238 HMGCS1Q01581 520 aa16.58■□□□□ 0.24
COL7A1-205ENST00000465238 BTKQ06187 659 aa16.58■□□□□ 0.24
COL7A1-205ENST00000465238 TBL3Q12788 808 aaKnown RBP16.58■□□□□ 0.24
COL7A1-205ENST00000465238 SLC13A2Q13183 592 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms