RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 RPL7AP62424 266 aaKnown RBP6.92□□□□□ -1.3
VPS53-204ENST00000437048 GRM2Q14416 872 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 RBMS2Q15434 407 aaKnown RBP6.92□□□□□ -1.3
VPS53-204ENST00000437048 RAET1GQ6H3X3 334 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 NETO2Q8NC67 525 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 PROKR2Q8NFJ6 384 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 HOXB13Q92826 284 aaPredicted RBP6.92□□□□□ -1.3
VPS53-204ENST00000437048 FGGYQ96C11 551 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 OR51J1Q9H342 316 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 AKTIPQ9H8T0 292 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 PCDH7O60245 1069 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 SOX15O60248 233 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 PAGE1O75459 146 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 KCNK2O95069 426 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 ETV5P41161 510 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 SLC1A3P43003 542 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 C5orf46Q6UWT4 87 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 SLC39A13Q96H72 371 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 WDR55Q9H6Y2 383 aaPredicted RBP6.92□□□□□ -1.3
VPS53-204ENST00000437048 FZD4Q9ULV1 537 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 KNDC1Q76NI1 1749 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 HSPB2A8KAH6 182 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 PIP5K1BO14986 540 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 ERAL1O75616 437 aaKnown RBP6.92□□□□□ -1.3
VPS53-204ENST00000437048 INSRRP14616 1297 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 HLA-DMAP28067 261 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 HOXA10P31260 410 aaPredicted RBP6.92□□□□□ -1.3
VPS53-204ENST00000437048 HSPB2Q16082 182 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 CRY2Q49AN0 593 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 KIAA1211LQ6NV74 962 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 ZFAND4Q86XD8 727 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 PAPD5Q8NDF8 572 aaKnown RBP6.92□□□□□ -1.3
VPS53-204ENST00000437048 CDK15Q96Q40 435 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 TIGARQ9NQ88 270 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 WASH6PQ9NQA3 447 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 BHLHE40O14503 412 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 SPATA31D3P0C874 917 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 CDC20Q12834 499 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 PPP1R3AQ16821 1122 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 CYBRD1Q53TN4 286 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 HENMT1Q5T8I9 393 aaKnown RBP6.92□□□□□ -1.3
VPS53-204ENST00000437048 SPATA31D4Q6ZUB0 917 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 SHFQ7M4L6 423 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 YIPF7Q8N8F6 280 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 AQP11Q8NBQ7 271 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 OR5P2Q8WZ92 322 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 HAS1Q92839 578 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 FAM46BQ96A09 425 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 NFS1Q9Y697 457 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 IL1RNP18510 177 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 FMO3P31513 532 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 MC2RQ01718 297 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 WDR48Q8TAF3 677 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 OMDQ99983 421 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 PCDHB9Q9Y5E1 797 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 ZNF726A6NNF4 738 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 SPATA31C2B4DYI2 1134 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 VEGFDO43915 354 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 AMHP03971 560 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 MYCLP1P12525 358 aaPredicted RBP6.92□□□□□ -1.3
VPS53-204ENST00000437048 PFKLP17858 780 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 PTPRAP18433 802 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 S100A10P60903 97 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 HBG1P69891 147 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 HBG2P69892 147 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 TAF1CQ15572 869 aaPredicted RBP6.92□□□□□ -1.3
VPS53-204ENST00000437048 ZNF627Q7L945 461 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 OR56B2PQ8NGI1 322 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 SLC35A5Q9BS91 424 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 PCED1AQ9H1Q7 454 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 LDAHQ9H6V9 325 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 FAM118AQ9NWS6 357 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 LRFN1Q9P244 771 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 CNTNAP1P78357 1384 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 TMEM200CA6NKL6 621 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 FGF4P08620 206 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 ZNF425Q6IV72 752 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 OR6K6Q8NGW6 343 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 OCSTAMPQ9BR26 566 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 BRF2Q9HAW0 419 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 CEPT1Q9Y6K0 416 aa6.92□□□□□ -1.3
VPS53-204ENST00000437048 MTNR1AP48039 350 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 PCDH1Q08174 1060 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 DNASE1L3Q13609 305 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 ZDHHC24Q6UX98 284 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 GALNTL5Q7Z4T8 443 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 OR8K3Q8NH51 312 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 SFXN5Q8TD22 340 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 TRAPPC12Q8WVT3 735 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 CHIAQ9BZP6 476 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 ZDHHC3Q9NYG2 299 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 CEP250Q9BV73 2442 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 TMEM150CB9EJG8 249 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 OR8U9P0C7N5 309 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 CCND3P30281 292 aaPredicted RBP6.91□□□□□ -1.3
VPS53-204ENST00000437048 THPOP40225 353 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 KCNAB2Q13303 367 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 PPTC7Q8NI37 304 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 PGLYRP2Q96PD5 576 aa6.91□□□□□ -1.3
VPS53-204ENST00000437048 AGPAT4Q9NRZ5 378 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms