RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 NPEPL1Q8NDH3 523 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 CNNM3Q8NE01 707 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 SPATA22Q8NHS9 363 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 LRRC8CQ8TDW0 803 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 IRGQQ8WZA9 623 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 RPL36ALQ969Q0 106 aaKnown RBP3.78□□□□□ -1.8
HMGB3-203ENST00000430118 CLDN23Q96B33 292 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 STAMBPL1Q96FJ0 436 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 IGSF21Q96ID5 467 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 CASD1Q96PB1 797 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 CCDC28BQ9BUN5 200 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 EDEM2Q9BV94 578 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 KRTAP17-1Q9BYP8 105 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 PRRG4Q9BZD6 226 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 OSBPL8Q9BZF1 889 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 MTMR12Q9C0I1 747 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 SNX25Q9H3E2 840 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 EBF3Q9H4W6 596 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 TMEM165Q9HC07 324 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 GPR173Q9NS66 373 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 DNAJC11Q9NVH1 559 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 ING1Q9UK53 422 aaPredicted RBP3.78□□□□□ -1.8
HMGB3-203ENST00000430118 PIN4Q9Y237 131 aaKnown RBP3.78□□□□□ -1.8
HMGB3-203ENST00000430118 VDAC3Q9Y277 283 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 TDRKHQ9Y2W6 561 aaKnown RBP3.78□□□□□ -1.8
HMGB3-203ENST00000430118 ASB3Q9Y575 518 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 ZMYM6O95789 1325 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 FRMPD4Q14CM0 1322 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 ASH1LQ9NR48 2969 aaKnown RBP3.77□□□□□ -1.81
HMGB3-203ENST00000430118 TEX13DA0A0J9YY54 714 aaPredicted RBP3.77□□□□□ -1.81
HMGB3-203ENST00000430118 A0A1W2PRB8 838 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 CLEC18AA5D8T8 446 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 CASTOR2A6NHX0 329 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 LRRIQ3A6PVS8 624 aaPredicted RBP3.77□□□□□ -1.81
HMGB3-203ENST00000430118 TMEM150CB9EJG8 249 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 PLOD2O00469 737 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 GAPDHSO14556 408 aaPredicted RBP3.77□□□□□ -1.81
HMGB3-203ENST00000430118 CPLX1O14810 134 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 LSM1O15116 133 aaKnown RBP3.77□□□□□ -1.81
HMGB3-203ENST00000430118 TXNL1O43396 289 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 SNX3O60493 162 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 WDR1O75083 606 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 ATP9AO75110 1047 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 PAPSS2O95340 614 aaPredicted RBP3.77□□□□□ -1.81
HMGB3-203ENST00000430118 ALPPP05187 535 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 TFAP2AP05549 437 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 GOLGA8HP0CJ92 632 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 ALPPL2P10696 532 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 MYOD1P15172 320 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 CSRP1P21291 193 aaKnown RBP3.77□□□□□ -1.81
HMGB3-203ENST00000430118 ALDH3A1P30838 453 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 CCNG1P51959 295 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 NME5P56597 212 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 RPS18P62269 152 aaKnown RBP3.77□□□□□ -1.81
HMGB3-203ENST00000430118 FOLH1Q04609 750 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 SRSF4Q08170 494 aaKnown RBP3.77□□□□□ -1.81
HMGB3-203ENST00000430118 KIF5AQ12840 1032 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 GAGE5Q13069 117 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 GAGE6Q13070 117 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 GTF2H2Q13888 395 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 GAMTQ14353 236 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 SLC39A14Q15043 492 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 CA9Q16790 459 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 WHAMMP3Q1A5X7 153 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 DUOXA1Q1HG43 343 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 CTU2Q2VPK5 515 aaKnown RBP3.77□□□□□ -1.81
HMGB3-203ENST00000430118 UGT3A2Q3SY77 523 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 CCDC153Q494R4 210 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 CCDC40Q4G0X9 1142 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 CYP4A22Q5TCH4 519 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 NDUFAF5Q5TEU4 345 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 KCTD11Q693B1 232 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 GTF2H2CQ6P1K8 395 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 ABRAXAS1Q6UWZ7 409 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 ASB18Q6ZVZ8 466 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 ADCK1Q86TW2 530 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 ZNF410Q86VK4 478 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 ANKRD46Q86W74 232 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 TMPRSS12Q86WS5 348 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 KMT5CQ86Y97 462 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 ECHDC2Q86YB7 292 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 SRRM1Q8IYB3 904 aaKnown RBP3.77□□□□□ -1.81
HMGB3-203ENST00000430118 LSMEM2Q8N112 164 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 MUC20Q8N307 709 aaPredicted RBP3.77□□□□□ -1.81
HMGB3-203ENST00000430118 CLIP4Q8N3C7 705 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 ZNF114Q8NC26 417 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 CLEC18CQ8NCF0 446 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 MAIP1Q8WWC4 291 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 IFT81Q8WYA0 676 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 DDB2Q92466 427 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 TMEM19Q96HH6 336 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 CDKN2AIPNLQ96HQ2 116 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 C8orf76Q96K31 380 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 RUNDC3BQ96NL0 473 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 PANX3Q96QZ0 392 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 PCYT2Q99447 389 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 PKP4Q99569 1192 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 C17orf62Q9BQA9 187 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 BPIFA3Q9BQP9 254 aa3.77□□□□□ -1.81
HMGB3-203ENST00000430118 TMEM175Q9BSA9 504 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms