RNA–Protein interactions for RNA: ENST00000428064.5

LIMS1-208, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 2

Gene LIMS1, Length 637 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-208ENST00000428064 H0YIV9 168 aa19.42■□□□□ 0.7
LIMS1-208ENST00000428064 PLPP1O14494 284 aa19.42■□□□□ 0.7
LIMS1-208ENST00000428064 DYRK3O43781 588 aa19.42■□□□□ 0.7
LIMS1-208ENST00000428064 FGF17O60258 216 aa19.42■□□□□ 0.7
LIMS1-208ENST00000428064 KLK8O60259 260 aa19.42■□□□□ 0.7
LIMS1-208ENST00000428064 CHRNB4P30926 498 aa19.42■□□□□ 0.7
LIMS1-208ENST00000428064 CASQ1P31415 396 aa19.42■□□□□ 0.7
LIMS1-208ENST00000428064 ETF1P62495 437 aaKnown RBP19.42■□□□□ 0.7
LIMS1-208ENST00000428064 PLIN5Q00G26 463 aa19.42■□□□□ 0.7
LIMS1-208ENST00000428064 PLGLB1Q02325 96 aa19.42■□□□□ 0.7
LIMS1-208ENST00000428064 SLAMF1Q13291 335 aa19.42■□□□□ 0.7
LIMS1-208ENST00000428064 EMC4Q5J8M3 183 aa19.42■□□□□ 0.7
LIMS1-208ENST00000428064 METTL2BQ6P1Q9 378 aaKnown RBP19.42■□□□□ 0.7
LIMS1-208ENST00000428064 FAM109AQ8N4B1 249 aa19.42■□□□□ 0.7
LIMS1-208ENST00000428064 ART5Q96L15 291 aa19.42■□□□□ 0.7
LIMS1-208ENST00000428064 DGAT2Q96PD7 388 aa19.42■□□□□ 0.7
LIMS1-208ENST00000428064 OR51B5Q9H339 312 aa19.42■□□□□ 0.7
LIMS1-208ENST00000428064 IL1RL2Q9HB29 575 aa19.42■□□□□ 0.7
LIMS1-208ENST00000428064 SACM1LQ9NTJ5 587 aa19.42■□□□□ 0.7
LIMS1-208ENST00000428064 PSD3Q9NYI0 1048 aa19.42■□□□□ 0.7
LIMS1-208ENST00000428064 A0A0G2JMM0 328 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 A0A1B0GVC2 190 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 A0A1W2PPB8 328 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 A0A1W2PRS3 328 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 KIR3DP1A8MWS1 328 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 ZNF354AO60765 605 aaPredicted RBP19.41■□□□□ 0.7
LIMS1-208ENST00000428064 C2P06681 752 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 IGFBP2P18065 325 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 CAPN3P20807 821 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 RAP1GDS1P52306 607 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 ALDH18A1P54886 795 aaKnown RBP19.41■□□□□ 0.7
LIMS1-208ENST00000428064 PHEXP78562 749 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 ACAP2Q15057 778 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 ZNF750Q32MQ0 723 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 PIGGQ5H8A4 983 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 GPR180Q86V85 440 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 DND1Q8IYX4 353 aaKnown RBP19.41■□□□□ 0.7
LIMS1-208ENST00000428064 SLC15A4Q8N697 577 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 TEX9Q8N6V9 391 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 KCTD4Q8WVF5 259 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 RND1Q92730 232 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 REPS1Q96D71 796 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 SENP5Q96HI0 755 aaPredicted RBP19.41■□□□□ 0.7
LIMS1-208ENST00000428064 FBXL20Q96IG2 436 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 PELOQ9BRX2 385 aaKnown RBP19.41■□□□□ 0.7
LIMS1-208ENST00000428064 ZNF717Q9BY31 904 aaPredicted RBP19.41■□□□□ 0.7
LIMS1-208ENST00000428064 DEFB127Q9H1M4 99 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 SH2D2AQ9NP31 389 aa19.41■□□□□ 0.7
LIMS1-208ENST00000428064 SDAD1Q9NVU7 687 aaKnown RBP eCLIP19.41■□□□□ 0.7
LIMS1-208ENST00000428064 HMX2A2RU54 273 aa19.4■□□□□ 0.7
LIMS1-208ENST00000428064 FAM166BA8MTA8 275 aa19.4■□□□□ 0.7
LIMS1-208ENST00000428064 SAP18O00422 153 aaKnown RBP19.4■□□□□ 0.7
LIMS1-208ENST00000428064 BCKDKO14874 412 aa19.4■□□□□ 0.7
LIMS1-208ENST00000428064 PDE9AO76083 593 aa19.4■□□□□ 0.7
LIMS1-208ENST00000428064 PTX3P26022 381 aaPredicted RBP19.4■□□□□ 0.7
LIMS1-208ENST00000428064 TLX1P31314 330 aaPredicted RBP19.4■□□□□ 0.7
LIMS1-208ENST00000428064 BUD31P41223 144 aaPredicted RBP19.4■□□□□ 0.7
LIMS1-208ENST00000428064 PIK3CGP48736 1102 aa19.4■□□□□ 0.7
LIMS1-208ENST00000428064 IRF9Q00978 393 aa19.4■□□□□ 0.7
LIMS1-208ENST00000428064 ID2Q02363 134 aa19.4■□□□□ 0.7
LIMS1-208ENST00000428064 FOLH1Q04609 750 aa19.4■□□□□ 0.7
LIMS1-208ENST00000428064 FOXO1Q12778 655 aa19.4■□□□□ 0.7
LIMS1-208ENST00000428064 TBL3Q12788 808 aaKnown RBP19.4■□□□□ 0.7
LIMS1-208ENST00000428064 CUL3Q13618 768 aa19.4■□□□□ 0.7
LIMS1-208ENST00000428064 PCBP2Q15366 365 aaKnown RBP eCLIP19.4■□□□□ 0.74e-7■■■■□ 22.4
LIMS1-208ENST00000428064 TRADDQ15628 312 aa19.4■□□□□ 0.7
LIMS1-208ENST00000428064 SPRED3Q2MJR0 410 aa19.4■□□□□ 0.7
LIMS1-208ENST00000428064 MRM1Q6IN84 353 aaKnown RBP19.4■□□□□ 0.7
LIMS1-208ENST00000428064 ACAD11Q709F0 780 aa19.4■□□□□ 0.7
LIMS1-208ENST00000428064 C9orf40Q8IXQ3 194 aa19.4■□□□□ 0.7
LIMS1-208ENST00000428064 ST13P4Q8IZP2 240 aaPredicted RBP19.4■□□□□ 0.7
LIMS1-208ENST00000428064 SLC22A8Q8TCC7 542 aa19.4■□□□□ 0.7
LIMS1-208ENST00000428064 RBM18Q96H35 190 aaKnown RBP19.4■□□□□ 0.7
LIMS1-208ENST00000428064 SORBS1Q9BX66 1292 aaKnown RBP19.4■□□□□ 0.7
LIMS1-208ENST00000428064 ACTR8Q9H981 624 aa19.4■□□□□ 0.7
LIMS1-208ENST00000428064 SNX15Q9NRS6 342 aa19.4■□□□□ 0.7
LIMS1-208ENST00000428064 LYARQ9NX58 379 aaKnown RBP19.4■□□□□ 0.7
LIMS1-208ENST00000428064 ATG4BQ9Y4P1 393 aa19.4■□□□□ 0.7
LIMS1-208ENST00000428064 ANGPTL3Q9Y5C1 460 aa19.4■□□□□ 0.7
LIMS1-208ENST00000428064 TNPO3Q9Y5L0 923 aaKnown RBP19.4■□□□□ 0.7
LIMS1-208ENST00000428064 PHF3Q92576 2039 aaKnown RBP19.4■□□□□ 0.7
LIMS1-208ENST00000428064 SH3BGRLO75368 114 aa19.39■□□□□ 0.69
LIMS1-208ENST00000428064 KLHL2O95198 593 aa19.39■□□□□ 0.69
LIMS1-208ENST00000428064 P04436 131 aa19.39■□□□□ 0.69
LIMS1-208ENST00000428064 GFAPP14136 432 aa19.39■□□□□ 0.69
LIMS1-208ENST00000428064 ALOX15P16050 662 aaPredicted RBP19.39■□□□□ 0.69
LIMS1-208ENST00000428064 GALNSP34059 522 aa19.39■□□□□ 0.69
LIMS1-208ENST00000428064 HNRNPH2P55795 449 aaKnown RBP19.39■□□□□ 0.69
LIMS1-208ENST00000428064 TFF3Q07654 80 aa19.39■□□□□ 0.69
LIMS1-208ENST00000428064 DDX39BQ13838 428 aaKnown RBP19.39■□□□□ 0.69
LIMS1-208ENST00000428064 PFKFB4Q16877 469 aa19.39■□□□□ 0.69
LIMS1-208ENST00000428064 ZNF791Q3KP31 576 aaPredicted RBP19.39■□□□□ 0.69
LIMS1-208ENST00000428064 MROH9Q5TGP6 573 aa19.39■□□□□ 0.69
LIMS1-208ENST00000428064 KLC3Q6P597 504 aa19.39■□□□□ 0.69
LIMS1-208ENST00000428064 CEP128Q6ZU80 1094 aa19.39■□□□□ 0.69
LIMS1-208ENST00000428064 FAM47EQ6ZV65 393 aa19.39■□□□□ 0.69
LIMS1-208ENST00000428064 RNF175Q8N4F7 328 aa19.39■□□□□ 0.69
LIMS1-208ENST00000428064 TMEM251Q8N6I4 163 aa19.39■□□□□ 0.69
LIMS1-208ENST00000428064 L3MBTL4Q8NA19 623 aa19.39■□□□□ 0.69
LIMS1-208ENST00000428064 LILRB4Q8NHJ6 448 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms