RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 MYL12BO14950 172 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 NARSO43776 548 aaKnown RBP8.24□□□□□ -1.09
USP40-203ENST00000427112 GMFGO60234 142 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 PRMT3O60678 531 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 CATP04040 527 aaKnown RBP8.24□□□□□ -1.09
USP40-203ENST00000427112 ITGAMP11215 1152 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 TYRP14679 529 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 UGT2B15P54855 530 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 SRP54P61011 504 aaKnown RBP8.24□□□□□ -1.09
USP40-203ENST00000427112 SRSF11Q05519 484 aaKnown RBP8.24□□□□□ -1.09
USP40-203ENST00000427112 TEAD2Q15562 447 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 PDZK1Q5T2W1 519 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 TMEM215Q68D42 235 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 ZNF57Q68EA5 555 aaPredicted RBP8.24□□□□□ -1.09
USP40-203ENST00000427112 ADGRD2Q7Z7M1 963 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 COMTD1Q86VU5 262 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 TMEFF1Q8IYR6 380 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 PIGKQ92643 395 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 TMEM19Q96HH6 336 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 SLC30A2Q9BRI3 323 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 WACQ9BTA9 647 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 BRD7Q9NPI1 651 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 SLAMF7Q9NQ25 335 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 CLN6Q9NWW5 311 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 SEC14L3Q9UDX4 400 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 SLC9A8Q9Y2E8 581 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 MED12Q93074 2177 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 KCNE1BA0A087WTH5 132 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 LOC102723532A0A0G2JNH3 316 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 A0A1W2PQL4 384 aaPredicted RBP8.24□□□□□ -1.09
USP40-203ENST00000427112 CPSF4LA6NMK7 179 aaKnown RBP8.24□□□□□ -1.09
USP40-203ENST00000427112 H0YC42 278 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 SCO1O75880 301 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 IFNW1P05000 195 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 CCNYL3P0C7X3 344 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 NR2F1P10589 423 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 GPX2P18283 190 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 MAT2AP31153 395 aaKnown RBP8.24□□□□□ -1.09
USP40-203ENST00000427112 SOX9P48436 509 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 DEFA1P59665 94 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 DEFA3P59666 94 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 STXBP1P61764 594 aaKnown RBP8.24□□□□□ -1.09
USP40-203ENST00000427112 ZNF517Q6ZMY9 492 aaPredicted RBP8.24□□□□□ -1.09
USP40-203ENST00000427112 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.24□□□□□ -1.09
USP40-203ENST00000427112 OR4F15Q8NGB8 312 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 PHF21AQ96BD5 680 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 HRASLS5Q96KN8 279 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 DCLRE1CQ96SD1 692 aaKnown RBP8.24□□□□□ -1.09
USP40-203ENST00000427112 C17orf62Q9BQA9 187 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 TSSK6Q9BXA6 273 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 RSPO3Q9BXY4 272 aaPredicted RBP8.24□□□□□ -1.09
USP40-203ENST00000427112 MED20Q9H944 212 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 ACER3Q9NUN7 267 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 NKIRAS2Q9NYR9 191 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 MRPL15Q9P015 296 aaKnown RBP8.24□□□□□ -1.09
USP40-203ENST00000427112 FNIP2Q9P278 1114 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 NLKQ9UBE8 527 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 SLC25A13Q9UJS0 675 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 SLC45A1Q9Y2W3 748 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 TRPM6Q9BX84 2022 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 CHD9Q3L8U1 2897 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 SNTNA6NMZ2 147 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 CENPXA8MT69 81 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 TMEM229AB2RXF0 380 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 FFAR1O14842 300 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 C8AP07357 584 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 MRPL3P09001 348 aaKnown RBP8.24□□□□□ -1.09
USP40-203ENST00000427112 SP3Q02447 781 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 PUM1Q14671 1186 aaKnown RBP eCLIP8.24□□□□□ -1.09
USP40-203ENST00000427112 LASP1Q14847 261 aaKnown RBP8.24□□□□□ -1.09
USP40-203ENST00000427112 GPAT3Q53EU6 434 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 OTPQ5XKR4 325 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 MED27Q6P2C8 311 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 GDPD4Q6W3E5 623 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 ELMOD2Q8IZ81 293 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 ATP6V1C2Q8NEY4 427 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.24□□□□□ -1.09
USP40-203ENST00000427112 POF1BQ8WVV4 589 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 LRR1Q96L50 414 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 FOPNLQ96NB1 174 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 SLC29A3Q9BZD2 475 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 HOXD1Q9GZZ0 328 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 SMURF1Q9HCE7 757 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 KLHL1Q9NR64 748 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 TEX10Q9NXF1 929 aaPredicted RBP8.24□□□□□ -1.09
USP40-203ENST00000427112 Q9Y3F1 56 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 DYRK1BQ9Y463 629 aa8.24□□□□□ -1.09
USP40-203ENST00000427112 NPIPA5A0A0B4J1W7 369 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 FABP12A6NFH5 140 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 FAM25AB3EWG3 89 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 FAM25CB3EWG5 89 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 FAM25GB3EWG6 89 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 NPIPA7E9PJI5 369 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 PRKYO43930 277 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 PRKNO60260 465 aaPredicted RBP8.23□□□□□ -1.09
USP40-203ENST00000427112 SLC2A10O95528 541 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 CTSLP07711 333 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 NPIPA8P0DM63 369 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 TIA1P31483 386 aaKnown RBP eCLIP8.23□□□□□ -1.09
USP40-203ENST00000427112 VIPR2P41587 438 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms