RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ADI1Q9BV57 179 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 LRRC61Q9BV99 259 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 YIPF2Q9BWQ6 316 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 BTBD2Q9BX70 525 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 SERHLQ9NQF3 203 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 MUC22E2RYF6 1773 aaPredicted RBP7.96□□□□□ -1.14
USP54-203ENST00000418501 CCDC160A6NGH7 325 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 PRR19A6NJB7 356 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 DPM1O60762 260 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 ETHE1O95571 254 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 ZNF888P0CJ79 500 aaPredicted RBP7.96□□□□□ -1.14
USP54-203ENST00000418501 NT5EP21589 574 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 EEF1B2P24534 225 aaKnown RBP7.96□□□□□ -1.14
USP54-203ENST00000418501 CAPZBP47756 277 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 XKP51811 444 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 VSX2P58304 361 aaPredicted RBP7.96□□□□□ -1.14
USP54-203ENST00000418501 BLMHQ13867 455 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 NRF1Q16656 503 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 TMEM102Q8N9M5 508 aaPredicted RBP7.96□□□□□ -1.14
USP54-203ENST00000418501 ANKRD53Q8N9V6 530 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 NFKBIDQ8NI38 313 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 TBC1D20Q96BZ9 403 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 OR2A14Q96R47 310 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 NDC1Q9BTX1 674 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 SCHIP1Q9P0W5 487 aaPredicted RBP7.96□□□□□ -1.14
USP54-203ENST00000418501 PNMA8BQ9ULN7 279 aaPredicted RBP7.96□□□□□ -1.14
USP54-203ENST00000418501 TPRKBQ9Y3C4 175 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 H0YGG7 62 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 TNFRSF11BO00300 401 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 RTCAO00442 366 aaKnown RBP7.95□□□□□ -1.14
USP54-203ENST00000418501 CASC3O15234 703 aaKnown RBP7.95□□□□□ -1.14
USP54-203ENST00000418501 MPZL2O60487 215 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 ALPPP05187 535 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 ETS2P15036 469 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 ARF3P61204 181 aaPredicted RBP7.95□□□□□ -1.14
USP54-203ENST00000418501 SELENOWP63302 87 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 HBA1P69905 142 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 ACY1Q03154 408 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 SIGLEC14Q08ET2 396 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 MERTKQ12866 999 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 RNF44Q7L0R7 432 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 ZNF595Q8IYB9 648 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 GIPC3Q8TF64 312 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 TMBIM1Q969X1 311 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 ZNF597Q96LX8 424 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 MS4A4EQ96PG1 132 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 ACTRT3Q9BYD9 372 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 CCNB1IP1Q9NPC3 277 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 SPHK1Q9NYA1 384 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 SLAMF8Q9P0V8 285 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 DLGAP2Q9P1A6 1054 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 KLF15Q9UIH9 416 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 SRPK3Q9UPE1 567 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 HSPE1-MOB4S4R3N1 261 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 AP3D1O14617 1153 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 PROM1O43490 865 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 PRICKLE3O43900 615 aaPredicted RBP7.95□□□□□ -1.14
USP54-203ENST00000418501 KCNK5O95279 499 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 CLPTM1O96005 669 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 UBTFL6P0CB48 400 aaPredicted RBP7.95□□□□□ -1.14
USP54-203ENST00000418501 TYRP1P17643 537 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 KRT20P35900 424 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 ZFP36L2P47974 494 aaKnown RBP7.95□□□□□ -1.14
USP54-203ENST00000418501 DAB2P98082 770 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 GTDC1Q4AE62 458 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 HLA-DQA1Q5Y7H0 255 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 SAXO2Q658L1 398 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 NCSTNQ92542 709 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 EDAQ92838 391 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 COL26A1Q96A83 441 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 RAB33BQ9H082 229 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 IL1RAPQ9NPH3 570 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 TUBA8Q9NY65 449 aaPredicted RBP7.95□□□□□ -1.14
USP54-203ENST00000418501 SLC25A37Q9NYZ2 338 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 PRODH2Q9UF12 536 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 OAZ3Q9UMX2 235 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 CKAP5Q14008 2032 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 SMIM31A0A1B0GVY4 71 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 KRT87PA6NCN2 255 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 M0QX08 132 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 OXSR1O95747 527 aaPredicted RBP7.95□□□□□ -1.14
USP54-203ENST00000418501 ENDOUP21128 410 aaKnown RBP7.95□□□□□ -1.14
USP54-203ENST00000418501 SPIBQ01892 262 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 ZXDCQ2QGD7 858 aaPredicted RBP7.95□□□□□ -1.14
USP54-203ENST00000418501 DEFB134Q4QY38 66 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 ZNF542PQ5EBM4 170 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 SHQ1Q6PI26 577 aaKnown RBP7.95□□□□□ -1.14
USP54-203ENST00000418501 CCDC80Q76M96 950 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 PIWIL3Q7Z3Z3 882 aaKnown RBP7.95□□□□□ -1.14
USP54-203ENST00000418501 SPRED1Q7Z699 444 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 P3H2Q8IVL5 708 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 RNF175Q8N4F7 328 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 NUP43Q8NFH3 380 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 TOR1AIP2Q8NFQ8 470 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 DNASE2BQ8WZ79 361 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 MVB12AQ96EY5 273 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 C11orf24Q96F05 449 aaPredicted RBP7.95□□□□□ -1.14
USP54-203ENST00000418501 FAM210AQ96ND0 272 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 DGAT2Q96PD7 388 aa7.95□□□□□ -1.14
USP54-203ENST00000418501 FNDC11Q9BVV2 318 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms