RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 TMEM170AQ8WVE7 144 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 OIT3Q8WWZ8 545 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 TANKQ92844 425 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 MSANTD3Q96H12 275 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 THAP7Q9BT49 309 aaPredicted RBP2.38□□□□□ -2.03
MCF2-204ENST00000414978 QTRT1Q9BXR0 403 aaKnown RBP2.38□□□□□ -2.03
MCF2-204ENST00000414978 CAPS2Q9BXY5 557 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 TSPYL1Q9H0U9 437 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 BARHL2Q9NY43 387 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 ATP6V1HQ9UI12 483 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 PTPRDP23468 1912 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 GSAPA4D1B5 854 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 C2CD4DB7Z1M9 353 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 ANHXE9PGG2 379 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 NPIPB8E9PQR5 432 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 LINC01565O15544 149 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 GRID2O43424 1007 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 TLX2O43763 284 aaPredicted RBP2.38□□□□□ -2.03
MCF2-204ENST00000414978 ERLIN1O75477 346 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 CSDE1O75534 798 aaKnown RBP2.38□□□□□ -2.03
MCF2-204ENST00000414978 CH25HO95992 272 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 CHRNA1P02708 482 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 ACAA1P09110 424 aaPredicted RBP2.38□□□□□ -2.03
MCF2-204ENST00000414978 RPA2P15927 270 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 JUNBP17275 347 aaPredicted RBP2.38□□□□□ -2.03
MCF2-204ENST00000414978 ITGB6P18564 788 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 LMO1P25800 156 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 PTBP1P26599 531 aaKnown RBP eCLIP2.38□□□□□ -2.03
MCF2-204ENST00000414978 PRDX2P32119 198 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 XIAPP98170 497 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 GHRHRQ02643 423 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 CETN1Q12798 172 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 GIT2Q14161 759 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 ARHGAP19Q14CB8 494 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 ZMYND11Q15326 602 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 CAMK4Q16566 473 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 ADNP2Q6IQ32 1131 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 TTC27Q6P3X3 843 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 KLC3Q6P597 504 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 RBM43Q6ZSC3 357 aaKnown RBP2.38□□□□□ -2.03
MCF2-204ENST00000414978 COMMD2Q86X83 199 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 EIF1ADQ8N9N8 165 aaKnown RBP2.38□□□□□ -2.03
MCF2-204ENST00000414978 RAB3IL1Q8TBN0 382 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 SEPT8Q92599 483 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 LGALS12Q96DT0 336 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 C11orf24Q96F05 449 aaPredicted RBP2.38□□□□□ -2.03
MCF2-204ENST00000414978 SLITRK1Q96PX8 696 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 UBAC1Q9BSL1 405 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 PINK1Q9BXM7 581 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 ZDHHC6Q9H6R6 413 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 PCDH9Q9HC56 1237 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 PPANQ9NQ55 473 aaKnown RBP2.38□□□□□ -2.03
MCF2-204ENST00000414978 ANKRD10Q9NXR5 420 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 LCMT1Q9UIC8 334 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 NOCTQ9UK39 431 aaKnown RBP2.38□□□□□ -2.03
MCF2-204ENST00000414978 CCPG1Q9ULG6 757 aa2.38□□□□□ -2.03
MCF2-204ENST00000414978 ZSCAN21Q9Y5A6 473 aaPredicted RBP2.38□□□□□ -2.03
MCF2-204ENST00000414978 KLF2Q9Y5W3 355 aaPredicted RBP2.38□□□□□ -2.03
MCF2-204ENST00000414978 ABCB11O95342 1321 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 FAM230AA0A1W2PPH8 454 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 LRRC3CA6NJW4 275 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 F5H6K3 240 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 H3BMH7 237 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 SGK1O00141 431 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 E2F3O00716 465 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 WISP2O76076 250 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 HSPD1P10809 573 aaKnown RBP2.37□□□□□ -2.03
MCF2-204ENST00000414978 HAPLN1P10915 354 aaPredicted RBP2.37□□□□□ -2.03
MCF2-204ENST00000414978 ACRV1P26436 265 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 CA8P35219 290 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 RPL21P46778 160 aaKnown RBP2.37□□□□□ -2.03
MCF2-204ENST00000414978 SLC6A12P48065 614 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 FMO5P49326 533 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 CNN1P51911 297 aaKnown RBP2.37□□□□□ -2.03
MCF2-204ENST00000414978 SPIBQ01892 262 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 DSC1Q08554 894 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 TRAF1Q13077 416 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 DHX34Q14147 1143 aaKnown RBP2.37□□□□□ -2.03
MCF2-204ENST00000414978 EFHC1Q5JVL4 640 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 TCHHL1Q5QJ38 904 aaPredicted RBP2.37□□□□□ -2.03
MCF2-204ENST00000414978 LY6G5CQ5SRR4 150 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 C18orf63Q68DL7 685 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 AMIGO1Q86WK6 493 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 TMC8Q8IU68 726 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 B4GALNT2Q8NHY0 566 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 RNF128Q8TEB7 428 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 FAM71F1Q96KD3 344 aaPredicted RBP2.37□□□□□ -2.03
MCF2-204ENST00000414978 LRR1Q96L50 414 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 USP28Q96RU2 1077 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 TRMOQ9BU70 441 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 DPEP3Q9H4B8 488 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 SLC38A10Q9HBR0 1119 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 FAF1Q9UNN5 650 aaPredicted RBP2.37□□□□□ -2.03
MCF2-204ENST00000414978 DOCK5Q9H7D0 1870 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 BRWD1Q9NSI6 2320 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 ZNF532Q9HCE3 1301 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 IGKV6D-41A0A0C4DH26 115 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 C13orf42A0A1B0GVH6 325 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 CTAGE15A4D2H0 777 aa2.37□□□□□ -2.03
MCF2-204ENST00000414978 POC1B-GALNT4F8VUJ3 575 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms