RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 PORP16435 677 aaPredicted RBP5.96□□□□□ -1.46
USP54-202ENST00000413442 KRT4P19013 534 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 CSNK2A2P19784 350 aaPredicted RBP5.96□□□□□ -1.46
USP54-202ENST00000413442 MAOAP21397 527 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 PRPH2P23942 346 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 CERS1P27544 350 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 SERPINB3P29508 390 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 MPIP34949 423 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 DEKP35659 375 aaKnown RBP5.96□□□□□ -1.46
USP54-202ENST00000413442 TMED10P49755 219 aaKnown RBP5.96□□□□□ -1.46
USP54-202ENST00000413442 SSR4P51571 173 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 MAPK12P53778 367 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 RPP38P78345 283 aaKnown RBP5.96□□□□□ -1.46
USP54-202ENST00000413442 OLR1P78380 273 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 OC90Q02509 493 aaPredicted RBP5.96□□□□□ -1.46
USP54-202ENST00000413442 MAP4K2Q12851 820 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 RAPSNQ13702 412 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 TUBA3CQ13748 450 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 UNC50Q53HI1 259 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 ZNF766Q5HY98 468 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 COLEC12Q5KU26 742 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 C6orf163Q5TEZ5 329 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 LIPMQ5VYY2 423 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 TUBA3EQ6PEY2 450 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 ZYG11AQ6WRX3 759 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 GPRIN3Q6ZVF9 776 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 SLC29A4Q7RTT9 530 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 SIRT6Q8N6T7 355 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 MDS2Q8NDY4 140 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 OR7G1Q8NGA0 311 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 OR52B6Q8NGF0 335 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 C16orf52Q8NHV5 167 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 UHMK1Q8TAS1 419 aaKnown RBP5.96□□□□□ -1.46
USP54-202ENST00000413442 SLC22A8Q8TCC7 542 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 GRHL3Q8TE85 626 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 PTPMT1Q8WUK0 201 aaPredicted RBP5.96□□□□□ -1.46
USP54-202ENST00000413442 CHTF18Q8WVB6 975 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 NR4A3Q92570 626 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 RELTQ969Z4 430 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 ANKRD9Q96BM1 317 aaPredicted RBP5.96□□□□□ -1.46
USP54-202ENST00000413442 SENP5Q96HI0 755 aaPredicted RBP5.96□□□□□ -1.46
USP54-202ENST00000413442 FBXL20Q96IG2 436 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 ZIM3Q96PE6 472 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 SMC6Q96SB8 1091 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 SECISBP2Q96T21 854 aaKnown RBP5.96□□□□□ -1.46
USP54-202ENST00000413442 SLX1AQ9BQ83 275 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 MFRPQ9BY79 579 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 STMN4Q9H169 189 aaPredicted RBP5.96□□□□□ -1.46
USP54-202ENST00000413442 EPB41L4BQ9H329 900 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 ZBTB20Q9HC78 741 aaPredicted RBP5.96□□□□□ -1.46
USP54-202ENST00000413442 SEMA4BQ9NPR2 832 aaPredicted RBP5.96□□□□□ -1.46
USP54-202ENST00000413442 PNO1Q9NRX1 252 aaKnown RBP5.96□□□□□ -1.46
USP54-202ENST00000413442 ASF1BQ9NVP2 202 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 ZNF358Q9NW07 568 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 CNIH4Q9P003 139 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 TBK1Q9UHD2 729 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 MCM8Q9UJA3 840 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 RAB21Q9UL25 225 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 MAPRE3Q9UPY8 281 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 SLC5A6Q9Y289 635 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 PLLPQ9Y342 182 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 TMED5Q9Y3A6 229 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 ASB1Q9Y576 335 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 CLDN16Q9Y5I7 305 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 ACTL7BQ9Y614 415 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 ZNF780BQ9Y6R6 833 aa5.96□□□□□ -1.46
USP54-202ENST00000413442 TLN1Q9Y490 2541 aaKnown RBP5.96□□□□□ -1.46
USP54-202ENST00000413442 ESPL1Q14674 2120 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 A0A1W2PPM1 405 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 A8MVJ9 347 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 C17orf105B2RV13 164 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 G3V2L1 256 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 SLC28A1O00337 649 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 NME2P1O60361 137 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 NPHS1O60500 1241 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 PLIN3O60664 434 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 DNAJB6O75190 326 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 ERLIN1O75477 346 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 ITGA10O75578 1167 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 NEURL1O76050 574 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 OR4F21O95013 312 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 PDYNP01213 254 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 STATHP02808 62 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 PROCP04070 461 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 IGKV3-11P04433 115 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 ATP1B1P05026 303 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 HOXD4P09016 255 aaPredicted RBP5.95□□□□□ -1.46
USP54-202ENST00000413442 MYZAPP0CAP1 466 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 NR2F6P10588 404 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 NEFHP12036 1026 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 AGAP20933 346 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 CNR1P21554 472 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 NME2P22392 152 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 TPP2P29144 1249 aaPredicted RBP5.95□□□□□ -1.46
USP54-202ENST00000413442 RPL3P39023 403 aaKnown RBP5.95□□□□□ -1.46
USP54-202ENST00000413442 EFNA3P52797 238 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 SLC18A1P54219 525 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 NAGLUP54802 743 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 NRG3P56975 720 aa5.95□□□□□ -1.46
USP54-202ENST00000413442 RNF4P78317 190 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms