RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 C22orf15Q8WYQ4 148 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 TMEM125Q96AQ2 219 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 CIDECQ96AQ7 238 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 BORCS7Q96B45 105 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 BORCS8Q96FH0 119 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 PGAP3Q96FM1 320 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 IMP4Q96G21 291 aaKnown RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 TMEM41AQ96HV5 264 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 MYRFLQ96LU7 910 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 MTERF1Q99551 399 aaKnown RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 GPATCH2Q9NW75 528 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 PRELID3BQ9Y3B1 194 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 COL2A1P02458 1487 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 ARPC4-TTLL3A0A0A6YYG9 625 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 BPNT1O95861 308 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 KLK1P06870 262 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 PGDP52209 483 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 POLR2HP52434 150 aaKnown RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 HNRNPA0Q13151 305 aaKnown RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 RAB11BQ15907 218 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 ITPRIPL2Q3MIP1 535 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 RNASE10Q5GAN6 216 aaKnown RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 Q8N402 240 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 CHDHQ8NE62 594 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 GPR150Q8NGU9 434 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 ZCCHC10Q8TBK6 192 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 CNOT9Q92600 299 aaKnown RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 YIPF4Q9BSR8 244 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 DPEP2Q9H4A9 486 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 WDR6Q9NNW5 1121 aaKnown RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 CENPMQ9NSP4 180 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 INSL6Q9Y581 213 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 ENTPD2Q9Y5L3 495 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 TRIM64CA6NLI5 447 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 M0R2N6 131 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 ARNTLO00327 626 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 H2BFMP0C1H6 154 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 PNMTP11086 282 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 POU2F1P14859 743 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 MSX2P35548 267 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 PCBP2Q15366 365 aaKnown RBP eCLIP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 ELOCQ15369 112 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 TCTE1Q5JU00 501 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 SLC2A7Q6PXP3 512 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 RABEPKQ7Z6M1 372 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 SPARTQ8N0X7 666 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 BEST3Q8N1M1 668 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 FBXO15Q8NCQ5 510 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 MFSD8Q8NHS3 518 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 RAB39BQ96DA2 213 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 WACQ9BTA9 647 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 RDH14Q9HBH5 336 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 CUEDC1Q9NWM3 386 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-203ENST00000409050 NDUFAF4Q9P032 175 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 ERVK-19Q9WJR5 959 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 ARL5AQ9Y689 179 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 A3GALT2U3KPV4 340 aa5.86□□□□□ -1.47
SCN1A-203ENST00000409050 CACNA1FO60840 1977 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SETD1BQ9UPS6 1966 aaKnown RBP5.85□□□□□ -1.47
SCN1A-203ENST00000409050 TEX51A0A1B0GUA7 166 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 CDHR4A6H8M9 788 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 A8MXE2 369 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 NIPSNAP2O75323 286 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 PAHP00439 452 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 ITGAMP11215 1152 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 CD1DP15813 335 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 LHCGRP22888 699 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 ARL3P36405 182 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SSTP61278 116 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 UFM1P61960 85 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 TLE2Q04725 743 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SERTAD2Q14140 314 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SPIN3Q5JUX0 258 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SPANXN4Q5MJ08 99 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 PLPP4Q5VZY2 271 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SLC18B1Q6NT16 456 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 PHC2Q8IXK0 858 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 OR9A4Q8NGU2 314 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SFXN5Q8TD22 340 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SH3RF2Q8TEC5 729 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 S100PBPQ96BU1 408 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SULT4A1Q9BR01 284 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 NPLQ9BXD5 320 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-203ENST00000409050 MTHFD2LQ9H903 347 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-203ENST00000409050 ABCB8Q9NUT2 735 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 KCNIP1Q9NZI2 227 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 HS3ST4Q9Y661 456 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SLC22A7Q9Y694 548 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 NUDT19A8MXV4 375 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 D6RAR5 112 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 GPR137BO60478 399 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 OSMP13725 252 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 FDXRP22570 491 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 CRABP1P29762 137 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 HOXA9P31269 272 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SLC6A9P48067 706 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 FLT3LGP49771 235 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 HK3P52790 923 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 TAS2R20P59543 309 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SLC3A1Q07837 685 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms