RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.41□□□□□ -0.26
SKA1-202ENST00000398452 TANKQ92844 425 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 MCUR1Q96AQ8 359 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 TBC1D20Q96BZ9 403 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 COQ8BQ96D53 544 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 ZNF764Q96H86 408 aaPredicted RBP13.41□□□□□ -0.26
SKA1-202ENST00000398452 PEX11GQ96HA9 241 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 GBP5Q96PP8 586 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 PANX1Q96RD7 426 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 TRPC4Q9UBN4 977 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 GPN3Q9UHW5 284 aaPredicted RBP13.41□□□□□ -0.26
SKA1-202ENST00000398452 CROTQ9UKG9 612 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 WASF3Q9UPY6 502 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 MAP4K5Q9Y4K4 846 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 MAU2Q9Y6X3 613 aa13.41□□□□□ -0.26
SKA1-202ENST00000398452 C15orf38-AP3S2A0A0A6YYH1 394 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 A0A1W2PRB8 838 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 GLOD5A6NK44 160 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 RNASET2O00584 256 aaKnown RBP13.4□□□□□ -0.26
SKA1-202ENST00000398452 RFXANKO14593 260 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 BMP10O95393 424 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 NPPAP01160 153 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 LAMP1P11279 417 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 CCL4P13236 92 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 CSNK2A2P19784 350 aaPredicted RBP13.4□□□□□ -0.26
SKA1-202ENST00000398452 MPIP34949 423 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 GPC1P35052 558 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 XCR1P46094 333 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 OR1D4P47884 311 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 PDX1P52945 283 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 STX4Q12846 297 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 SLC13A2Q13183 592 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 C18orf63Q68DL7 685 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 ARPINQ7Z6K5 226 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 DHDDSQ86SQ9 333 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 GALNT15Q8N3T1 639 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 SLC45A3Q96JT2 553 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 TAAR9Q96RI9 348 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 SH3GL1Q99961 368 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 DPH2Q9BQC3 489 aaPredicted RBP13.4□□□□□ -0.26
SKA1-202ENST00000398452 ULBP3Q9BZM4 244 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 MKKSQ9NPJ1 570 aaPredicted RBP13.4□□□□□ -0.26
SKA1-202ENST00000398452 SLC35C2Q9NQQ7 365 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 PRTFDC1Q9NRG1 225 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 TOR4AQ9NXH8 423 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.4□□□□□ -0.26
SKA1-202ENST00000398452 BTNL2Q9UIR0 455 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 VPS4AQ9UN37 437 aa13.4□□□□□ -0.26
SKA1-202ENST00000398452 SYNDIG1LA6NDD5 238 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 C9J4A7 227 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 ERN1O75460 977 aaKnown RBP13.39□□□□□ -0.27
SKA1-202ENST00000398452 NTRK1P04629 796 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 FHP07954 510 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 TRPC1P48995 793 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 MAT1AQ00266 395 aaKnown RBP13.39□□□□□ -0.27
SKA1-202ENST00000398452 PLIN5Q00G26 463 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 BIKQ13323 160 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 TRMT5Q32P41 509 aaKnown RBP13.39□□□□□ -0.27
SKA1-202ENST00000398452 SPDYE7PQ495Y7 208 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 PRAMEF17Q5VTA0 474 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 SLC2A7Q6PXP3 512 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 HACD2Q6Y1H2 254 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 ANKRD46Q86W74 232 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 CACTIN-AS1Q8N1I8 211 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 ARHGEF39Q8N4T4 335 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 OR4A15Q8NGL6 344 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 OR5P2Q8WZ92 322 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 OR1F2PQ96R84 312 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 HOPXQ9BPY8 73 aaPredicted RBP13.39□□□□□ -0.27
SKA1-202ENST00000398452 BTBD10Q9BSF8 475 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 DDA1Q9BW61 102 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 C1orf21Q9H246 121 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 IL1RL2Q9HB29 575 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 NEUROD4Q9HD90 331 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 APMAPQ9HDC9 416 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 SEMA3GQ9NS98 782 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 TAS2R7Q9NYW3 318 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 KCMF1Q9P0J7 381 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 IFT80Q9P2H3 777 aaPredicted RBP13.39□□□□□ -0.27
SKA1-202ENST00000398452 ZNF282Q9UDV7 671 aaPredicted RBP13.39□□□□□ -0.27
SKA1-202ENST00000398452 L3MBTL1Q9Y468 752 aa13.39□□□□□ -0.27
SKA1-202ENST00000398452 AKAP13Q12802 2813 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 H3BMH7 237 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 OR10H2O60403 315 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 B4GALT2O60909 372 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 ABCB1P08183 1280 aaPredicted RBP13.38□□□□□ -0.27
SKA1-202ENST00000398452 CD63P08962 238 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 CCNYL3P0C7X3 344 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 T-ENOLP0DO92 83 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 ITIH1P19827 911 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 SOAT1P35610 550 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 XKP51811 444 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 NCBP2P52298 156 aaKnown RBP eCLIP13.38□□□□□ -0.27
SKA1-202ENST00000398452 COL9A2Q14055 689 aaPredicted RBP13.38□□□□□ -0.27
SKA1-202ENST00000398452 TLR1Q15399 786 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 MINDY4Q4G0A6 757 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 NKAIN1Q4KMZ8 207 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 C3orf38Q5JPI3 329 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 ZNF621Q6ZSS3 439 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 PGAM4Q8N0Y7 254 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms