RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 OR52B6Q8NGF0 335 aa9.69□□□□□ -0.86
NEDD8-202ENST00000396828 DNAJB8Q8NHS0 232 aa9.69□□□□□ -0.86
NEDD8-202ENST00000396828 METTL6Q8TCB7 284 aa9.69□□□□□ -0.86
NEDD8-202ENST00000396828 ADAMTS18Q8TE60 1221 aa9.69□□□□□ -0.86
NEDD8-202ENST00000396828 CCT6BQ92526 530 aa9.69□□□□□ -0.86
NEDD8-202ENST00000396828 PEX11GQ96HA9 241 aa9.69□□□□□ -0.86
NEDD8-202ENST00000396828 SPNS1Q9H2V7 528 aa9.69□□□□□ -0.86
NEDD8-202ENST00000396828 KLHL1Q9NR64 748 aa9.69□□□□□ -0.86
NEDD8-202ENST00000396828 LANCL2Q9NS86 450 aa9.69□□□□□ -0.86
NEDD8-202ENST00000396828 TRPS1Q9UHF7 1281 aa9.69□□□□□ -0.86
NEDD8-202ENST00000396828 TINAGQ9UJW2 476 aa9.69□□□□□ -0.86
NEDD8-202ENST00000396828 USH1CQ9Y6N9 552 aa9.69□□□□□ -0.86
NEDD8-202ENST00000396828 NF1P21359 2839 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 MAP1AP78559 2803 aaPredicted RBP9.68□□□□□ -0.86
NEDD8-202ENST00000396828 A0A0G2JND7 137 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 SNX3O60493 162 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 SLC19A2O60779 497 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 CRYABP02511 175 aaKnown RBP9.68□□□□□ -0.86
NEDD8-202ENST00000396828 CDH1P12830 882 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 ICAM2P13598 275 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 NPPBP16860 134 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 HTR1EP28566 365 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 HMOX2P30519 316 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 HNF4AP41235 474 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 ARFIP2P53365 341 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 AQP5P55064 265 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 RPS15AP62244 130 aaKnown RBP9.68□□□□□ -0.86
NEDD8-202ENST00000396828 PCDH1Q08174 1060 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 TRAF3Q13114 568 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 CHIT1Q13231 466 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 LAPTM5Q13571 262 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 HIST2H2ACQ16777 129 aaPredicted RBP9.68□□□□□ -0.86
NEDD8-202ENST00000396828 NDUFA9Q16795 377 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 ZNF630Q2M218 657 aaPredicted RBP9.68□□□□□ -0.86
NEDD8-202ENST00000396828 GGTA1PQ4G0N0 100 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 SFT2D3Q587I9 215 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 PAGE2BQ5JRK9 111 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 RNFT1Q5M7Z0 435 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 CLEC6AQ6EIG7 209 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 HIST2H2AA3Q6FI13 130 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 LETMD1Q6P1Q0 360 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 ASPGQ86U10 573 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 C17orf64Q86WR6 236 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 ZNF227Q86WZ6 799 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 CHERPQ8IWX8 916 aaKnown RBP9.68□□□□□ -0.86
NEDD8-202ENST00000396828 KIF2BQ8N4N8 673 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 CDYL2Q8N8U2 506 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 L3MBTL4Q8NA19 623 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 CCDC197Q8NCU1 140 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 ZNF740Q8NDX6 193 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 SLC13A3Q8WWT9 602 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 SLC5A11Q8WWX8 675 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 METTL21AQ8WXB1 218 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 REPS1Q96D71 796 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 PTCD3Q96EY7 689 aaKnown RBP9.68□□□□□ -0.86
NEDD8-202ENST00000396828 THOC1Q96FV9 657 aaKnown RBP9.68□□□□□ -0.86
NEDD8-202ENST00000396828 CDK15Q96Q40 435 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 OR4K3Q96R72 315 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 CCT7Q99832 543 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 EHD1Q9H4M9 534 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 KCNK13Q9HB14 408 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 RYDENQ9NUL5 291 aaKnown RBP9.68□□□□□ -0.86
NEDD8-202ENST00000396828 DCTN4Q9UJW0 460 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 SNX6Q9UNH7 406 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 NAALAD2Q9Y3Q0 740 aa9.68□□□□□ -0.86
NEDD8-202ENST00000396828 CCDC168Q8NDH2 2452 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 SETD2Q9BYW2 2564 aaPredicted RBP9.67□□□□□ -0.86
NEDD8-202ENST00000396828 TMEM233B4DJY2 109 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 FAM227AF5H4B4 570 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 NEURL1O76050 574 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 KRT6AP02538 564 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 KRT6BP04259 564 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 C1GALT1C1LP0DN25 315 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 ALOX15P16050 662 aaPredicted RBP9.67□□□□□ -0.86
NEDD8-202ENST00000396828 EPORP19235 508 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 HRH2P25021 359 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 ELAVL4P26378 380 aaKnown RBP9.67□□□□□ -0.86
NEDD8-202ENST00000396828 KRT6CP48668 564 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 CCR8P51685 355 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 HSF1Q00613 529 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 OR1C1Q15619 314 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 TBCCQ15814 346 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 PDCD2Q16342 344 aaPredicted RBP9.67□□□□□ -0.86
NEDD8-202ENST00000396828 GRHL2Q6ISB3 625 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 CGB2Q6NT52 195 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 PAPD4Q6PIY7 484 aaKnown RBP9.67□□□□□ -0.86
NEDD8-202ENST00000396828 NXPE4Q6UWF7 544 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 ACAD11Q709F0 780 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.67□□□□□ -0.86
NEDD8-202ENST00000396828 TMPRSS11BQ86T26 416 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 DDIASQ8IXT1 998 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 ZNF295-AS1Q8N0V1 137 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 KRT78Q8N1N4 520 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 ZNF808Q8N4W9 903 aaPredicted RBP9.67□□□□□ -0.86
NEDD8-202ENST00000396828 RFWD2Q8NHY2 731 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 SUN3Q8TAQ9 357 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 TWIST2Q8WVJ9 160 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 NEIL2Q969S2 332 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 UBE2E3Q969T4 207 aa9.67□□□□□ -0.86
NEDD8-202ENST00000396828 SCMH1Q96GD3 660 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms