RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ASMTP46597 345 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 ITPKCQ96DU7 683 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 ITCHQ96J02 903 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 SH3GL1Q99961 368 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 ING2Q9H160 280 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 ARMC7Q9H6L4 198 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 WARS2Q9UGM6 360 aaKnown RBP9.8□□□□□ -0.84
COL6A3-205ENST00000392004 DAPK2Q9UIK4 370 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 RIMKLBQ9ULI2 386 aa9.8□□□□□ -0.84
COL6A3-205ENST00000392004 HYKKA2RU49 373 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 J3QRK9 145 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 STX16O14662 325 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 ATE1O95260 518 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 CSF2P04141 144 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 HOXD12P35452 270 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 OR4D2P58180 307 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 ERVK-8P63133 956 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 MERTKQ12866 999 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 TMEM53Q6P2H8 277 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 ANKFN1Q8N957 763 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 ATG16L2Q8NAA4 619 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 HCAR2Q8TDS4 363 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 CANT1Q8WVQ1 401 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 FBXL8Q96CD0 374 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 TEX101Q9BY14 249 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 SEMA3GQ9NS98 782 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 PCDHGA7Q9Y5G6 932 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 PCYT1BQ9Y5K3 369 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-205ENST00000392004 LOC105369274A0A096LPK9 316 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 LOC102723532A0A0G2JNH3 316 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 CNOT3O75175 753 aaKnown RBP9.79□□□□□ -0.84
COL6A3-205ENST00000392004 BCKDHAP12694 445 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 JAK1P23458 1154 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 GTF2E2P29084 291 aaKnown RBP9.79□□□□□ -0.84
COL6A3-205ENST00000392004 SLC26A3P40879 764 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 PCYT1AP49585 367 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 ACY1Q03154 408 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 SPESP1Q6UW49 350 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 ERMP1Q7Z2K6 904 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 OR4N4Q8N0Y3 316 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 DTWD1Q8N5C7 304 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 CADM4Q8NFZ8 388 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 TFAP2CQ92754 450 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 ZBED6CLQ96FA7 236 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-205ENST00000392004 VPS35Q96QK1 796 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 TMPRSS11EQ9UL52 423 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 WDR81Q562E7 1941 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 C17orf113A0A1B0GUU1 675 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 DHRS12A0PJE2 317 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 SLC5A10A0PJK1 596 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 HTR3EA5X5Y0 456 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 G3V3Y1 287 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 H3BMQ9 156 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 SOCS2O14508 198 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 TNFRSF10CO14798 259 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 IL6P05231 212 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 HOXB3P14651 431 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-205ENST00000392004 IL12BP29460 328 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 KIAA1024LP59773 190 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 ABHD18Q0P651 414 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 KIR2DS3Q14952 304 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 TRIP6Q15654 476 aaKnown RBP9.79□□□□□ -0.84
COL6A3-205ENST00000392004 NDUFAF5Q5TEU4 345 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 KIAA1614Q5VZ46 1190 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 TMEM107Q6UX40 140 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 KCTD8Q6ZWB6 473 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 KRT73Q86Y46 540 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 COG8Q96MW5 612 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 KCNC2Q96PR1 638 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 ZNF382Q96SR6 550 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 DEFB126Q9BYW3 111 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 SPRTNQ9H040 489 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-205ENST00000392004 KIR3DX1Q9H7L2 352 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 ANKRA2Q9H9E1 313 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 POPDC3Q9HBV1 291 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 PALMDQ9NP74 551 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 SEC14L3Q9UDX4 400 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 FAM47E-STBD1D6RA91 191 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 ZNF749O43361 778 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 KLHL18O94889 574 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 TNFSF15O95150 251 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 WNT1P04628 370 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 RNH1P13489 461 aaKnown RBP9.79□□□□□ -0.84
COL6A3-205ENST00000392004 NME1P15531 152 aaKnown RBP9.79□□□□□ -0.84
COL6A3-205ENST00000392004 IL7RP16871 459 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 NXPH1P58417 271 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 RAB39AQ14964 217 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 VWA2Q5GFL6 755 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 FAM69BQ5VUD6 431 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 OR5M10Q6IEU7 315 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 GALNT18Q6P9A2 607 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 FIGNL1Q6PIW4 674 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 CNTN4Q8IWV2 1026 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 CLECL1Q8IZS7 167 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 CHCHD4Q8N4Q1 142 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 FATE1Q969F0 183 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 P2RY12Q9H244 342 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 SMOXQ9NWM0 555 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 LUZP4Q9P127 313 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 PLCL2Q9UPR0 1127 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms