RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 LIPNQ5VXI9 398 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 FRG2Q64ET8 278 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 ERICH5Q6P6B1 374 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 FRMD7Q6ZUT3 714 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 ZC3HC1Q86WB0 502 aaKnown RBP8.79□□□□□ -1
LIMCH1-202ENST00000381753 ZNF433Q8N7K0 673 aaPredicted RBP8.79□□□□□ -1
LIMCH1-202ENST00000381753 OR5AK3PQ8NH89 298 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 WDR60Q8WVS4 1066 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 PGAM5Q96HS1 289 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 FRG2BQ96QU4 278 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 NXF5Q9H1B4 397 aaKnown RBP8.79□□□□□ -1
LIMCH1-202ENST00000381753 C1GALT1Q9NS00 363 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 GPRC5BQ9NZH0 403 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 GSTK1Q9Y2Q3 226 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 A0A087WUU8 490 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 C1orf226A1L170 272 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 MAGEB17A8MXT2 336 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 M0R2N6 131 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 NPHS1O60500 1241 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 GLCEO94923 617 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 TNFAIP8O95379 198 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 OPN1LWP04000 364 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 TPSB2P20231 275 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 PTGS2P35354 604 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 TBPL1P62380 186 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 SCRN3Q0VDG4 424 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 TPSAB1Q15661 275 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 SPIN3Q5JUX0 258 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 LRP10Q7Z4F1 713 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 SPATA19Q7Z5L4 167 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 TSPAN33Q86UF1 283 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 WDR5BQ86VZ2 330 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 PM20D2Q8IYS1 436 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 EPS8L3Q8TE67 593 aaKnown RBP8.79□□□□□ -1
LIMCH1-202ENST00000381753 ZNF384Q8TF68 577 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 PTCD3Q96EY7 689 aaKnown RBP8.79□□□□□ -1
LIMCH1-202ENST00000381753 DNTTIP1Q9H147 329 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 HLA-FP30511 346 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 THBS2P35442 1172 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 PLEKHA7Q6IQ23 1121 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 TEX29Q8N6K0 151 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 KDM1BQ8NB78 822 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 ISG20Q96AZ6 181 aaKnown RBP8.78□□□□□ -1
LIMCH1-202ENST00000381753 TRNAU1APQ9NX07 287 aaKnown RBP8.78□□□□□ -1
LIMCH1-202ENST00000381753 CMTM6Q9NX76 183 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 TOR1AO14656 332 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 BEST1O76090 585 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 DLGAP3O95886 979 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 IL4RP24394 825 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 FASP25445 335 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 LASP1Q14847 261 aaKnown RBP8.78□□□□□ -1
LIMCH1-202ENST00000381753 ZNF77Q15935 545 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 DPYSL2Q16555 572 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 KIAA0930Q6ICG6 404 aaPredicted RBP8.78□□□□□ -1
LIMCH1-202ENST00000381753 MON1BQ7L1V2 547 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 CUZD1Q86UP6 607 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 KMT5CQ86Y97 462 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 C10orf107Q8IVU9 208 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 OR5M9Q8NGP3 310 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 THEM6Q8WUY1 208 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 ZNF566Q969W8 418 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 MOAP1Q96BY2 351 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 POLDIP3Q9BY77 421 aaKnown RBP8.78□□□□□ -1
LIMCH1-202ENST00000381753 EURLQ9NYK6 297 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 TMEM9Q9P0T7 183 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 ERGIC3Q9Y282 383 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 NOP16Q9Y3C1 178 aaKnown RBP8.78□□□□□ -1
LIMCH1-202ENST00000381753 SAMHD1Q9Y3Z3 626 aaKnown RBP8.78□□□□□ -1
LIMCH1-202ENST00000381753 LDLRP01130 860 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 C1GALT1C1LP0DN25 315 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 NKAIN1Q4KMZ8 207 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 ZNF766Q5HY98 468 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 SYCE2Q6PIF2 218 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 TMPRSS11AQ6ZMR5 421 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 ANKRD46Q86W74 232 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 ZFAND4Q86XD8 727 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 KBTBD7Q8WVZ9 684 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 PKP4Q99569 1192 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 SEMA6CQ9H3T2 930 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 KCTD3Q9Y597 815 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 PHRF1Q9P1Y6 1649 aaKnown RBP8.78□□□□□ -1
LIMCH1-202ENST00000381753 GSTM3P21266 225 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 HOXD12P35452 270 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 MAP3K8P41279 467 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 GPR85P60893 370 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 CSRP2Q16527 193 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 C3orf33Q6P1S2 294 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 TMEM71Q6P5X7 295 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 BEND4Q6ZU67 534 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 CCDC80Q76M96 950 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 TMEM173Q86WV6 379 aaPredicted RBP8.78□□□□□ -1
LIMCH1-202ENST00000381753 SETD9Q8NE22 299 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 OR5AR1Q8NGP9 310 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 ACTRT1Q8TDG2 376 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 NSMAFQ92636 917 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 NXNL1Q96CM4 212 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 PIGQQ9BRB3 760 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 IFT46Q9NQC8 304 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 TRAF6Q9Y4K3 522 aa8.78□□□□□ -1
LIMCH1-202ENST00000381753 KAT6AQ92794 2004 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms