RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 FAIMQ9NVQ4 179 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 TRNAU1APQ9NX07 287 aaKnown RBP12.7□□□□□ -0.38
CCDC3-202ENST00000378839 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.7□□□□□ -0.38
CCDC3-202ENST00000378839 ENPP4Q9Y6X5 453 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 GLOD5A6NK44 160 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 CAPN5O15484 640 aaPredicted RBP12.7□□□□□ -0.38
CCDC3-202ENST00000378839 NARSO43776 548 aaKnown RBP12.7□□□□□ -0.38
CCDC3-202ENST00000378839 SULT1C4O75897 302 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 MFN2O95140 757 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 STSP08842 583 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 RPL3P39023 403 aaKnown RBP12.7□□□□□ -0.38
CCDC3-202ENST00000378839 LSM11P83369 360 aaKnown RBP eCLIP12.7□□□□□ -0.38
CCDC3-202ENST00000378839 NR1D2Q14995 579 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 ARHGAP19Q14CB8 494 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 KIAA1161Q6NSJ0 714 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 C6orf120Q7Z4R8 191 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 DOCK8Q8NF50 2099 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 OR5D16Q8NGK9 328 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 JPH3Q8WXH2 748 aaPredicted RBP12.7□□□□□ -0.38
CCDC3-202ENST00000378839 FERD3LQ96RJ6 166 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 AIF1LQ9BQI0 150 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 IGFLR1Q9H665 355 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 RNF167Q9H6Y7 350 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 FZD3Q9NPG1 666 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 KLHL20Q9Y2M5 609 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 SEMA3DO95025 777 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 KRT75O95678 551 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 SEC13P55735 322 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 PHEXP78562 749 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 SFSWAPQ12872 951 aaKnown RBP12.69□□□□□ -0.38
CCDC3-202ENST00000378839 ELOAQ14241 798 aaKnown RBP12.69□□□□□ -0.38
CCDC3-202ENST00000378839 PTGES3Q15185 160 aaKnown RBP12.69□□□□□ -0.38
CCDC3-202ENST00000378839 REEP3Q6NUK4 255 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 ARMC8Q8IUR7 673 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 SLC7A5P1Q8MH63 180 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 AQP11Q8NBQ7 271 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 OR5P2Q8WZ92 322 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 SMPDL3AQ92484 453 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 C12orf66Q96MD2 445 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 C17orf62Q9BQA9 187 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 NLNQ9BYT8 704 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 OSGEPL1Q9H4B0 414 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 NMNAT1Q9HAN9 279 aaPredicted RBP12.69□□□□□ -0.38
CCDC3-202ENST00000378839 KCND3Q9UK17 655 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 A0A0A6YYD5 115 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 A8MU76 341 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 PDPK1O15530 556 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 NDUFS4O43181 175 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 GADD45GO95257 159 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 CEACAM5P06731 702 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 CD36P16671 472 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 PEBP1P30086 187 aaKnown RBP12.69□□□□□ -0.38
CCDC3-202ENST00000378839 ENPP2Q13822 863 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 TCEA2Q15560 299 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 CARTPTQ16568 116 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 TCTN3Q6NUS6 607 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 DSG4Q86SJ6 1040 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 UTP15Q8TED0 518 aaKnown RBP12.69□□□□□ -0.38
CCDC3-202ENST00000378839 FGF14Q92915 247 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 MKRN2Q9H000 416 aaKnown RBP12.69□□□□□ -0.38
CCDC3-202ENST00000378839 SFXN1Q9H9B4 322 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 A4GALTQ9NPC4 353 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 TBC1D23Q9NUY8 699 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 SCHIP1Q9P0W5 487 aaPredicted RBP12.69□□□□□ -0.38
CCDC3-202ENST00000378839 FTSJ1Q9UET6 329 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 SNRNP200O75643 2136 aaKnown RBP12.69□□□□□ -0.38
CCDC3-202ENST00000378839 PRR19A6NJB7 356 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 KMOO15229 486 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 EPPINO95925 133 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 SLC35G4P0C7Q5 338 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 ALPPL2P10696 532 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 BCL6P41182 706 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 SYPL1Q16563 259 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 MLIPQ5VWP3 458 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 C16orf87Q6PH81 154 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 PARM1Q6UWI2 310 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 CENPSQ8N2Z9 138 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 MFSD4AQ8N468 514 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 IPCEF1Q8WWN9 437 aaPredicted RBP12.69□□□□□ -0.38
CCDC3-202ENST00000378839 LZICQ8WZA0 190 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 CAMK1GQ96NX5 476 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 ALPK1Q96QP1 1244 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 DPH7Q9BTV6 452 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 WDR26Q9H7D7 661 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 ZBTB20Q9HC78 741 aaPredicted RBP12.69□□□□□ -0.38
CCDC3-202ENST00000378839 SLC6A20Q9NP91 592 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 PLCXD1Q9NUJ7 323 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 IMP3Q9NV31 184 aaKnown RBP12.69□□□□□ -0.38
CCDC3-202ENST00000378839 ANGPT4Q9Y264 503 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 POFUT2Q9Y2G5 429 aa12.69□□□□□ -0.38
CCDC3-202ENST00000378839 LRIT2A6NDA9 550 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 CLCA1A8K7I4 914 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 NME6O75414 186 aaPredicted RBP12.68□□□□□ -0.38
CCDC3-202ENST00000378839 PTHP01270 115 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 SERPIND1P05546 499 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 CDK1P06493 297 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 ANXA8P13928 327 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 CHMP24386 653 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 ITGADQ13349 1161 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 DGLUCYQ7Z3D6 616 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms