RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 ARMCX4Q5H9R4 360 aa13.52□□□□□ -0.24
SHROOM1-203ENST00000378679 SPRED2Q7Z698 418 aa13.52□□□□□ -0.24
SHROOM1-203ENST00000378679 GRHL3Q8TE85 626 aa13.52□□□□□ -0.24
SHROOM1-203ENST00000378679 STON2Q8WXE9 905 aa13.52□□□□□ -0.24
SHROOM1-203ENST00000378679 HSPA12BQ96MM6 686 aa13.52□□□□□ -0.24
SHROOM1-203ENST00000378679 OR51I1Q9H343 314 aa13.52□□□□□ -0.24
SHROOM1-203ENST00000378679 EPHX3Q9H6B9 360 aa13.52□□□□□ -0.24
SHROOM1-203ENST00000378679 PRTFDC1Q9NRG1 225 aa13.52□□□□□ -0.24
SHROOM1-203ENST00000378679 GPC6Q9Y625 555 aaPredicted RBP13.52□□□□□ -0.24
SHROOM1-203ENST00000378679 PMF1-BGLAPU3KQ54 211 aa13.52□□□□□ -0.24
SHROOM1-203ENST00000378679 TARM1B6A8C7 271 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 EMC8O43402 210 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 PROS1P07225 676 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 RNH1P13489 461 aaKnown RBP13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 PVRP15151 417 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 ACSL1P33121 698 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 IGFALSP35858 605 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 MASP1P48740 699 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 PCDH1Q08174 1060 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 MRPL28Q13084 256 aaKnown RBP13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 NNATQ16517 81 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 RPE65Q16518 533 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 PTCRAQ6ISU1 281 aaPredicted RBP13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 IKBIPQ70UQ0 350 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 L3MBTL4Q8NA19 623 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 OR52N2Q8NGI0 321 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 MCFD2Q8NI22 146 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 ZNF707Q96C28 371 aaPredicted RBP13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 TBL1XR1Q9BZK7 514 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 IL1RAPQ9NPH3 570 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 SMOXQ9NWM0 555 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 ACTR10Q9NZ32 417 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 GMPR2Q9P2T1 348 aaKnown RBP13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 SSR3Q9UNL2 185 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 YBX2Q9Y2T7 364 aaKnown RBP13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 RIIAD1A6NNX1 92 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 PSIP1O75475 530 aaKnown RBP13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 C1QAP02745 245 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 CTSLP07711 333 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 CXCL12P48061 93 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 ST3GAL3Q11203 375 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 COMMD2Q86X83 199 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 LRRC25Q8N386 305 aaPredicted RBP13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 OR4C6Q8NH72 309 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 IFT27Q9BW83 186 aa13.52□□□□□ -0.25
SHROOM1-203ENST00000378679 CPSF4LA6NMK7 179 aaKnown RBP13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 H0YIV9 168 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 STX11O75558 287 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 OR2B3O76000 313 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 PTNP21246 168 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 PTGER1P34995 402 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 BLVRAP53004 296 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 ITGA1P56199 1179 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 NPTX1Q15818 432 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 IQCCQ4KMZ1 466 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 OGFRL1Q5TC84 451 aaPredicted RBP13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 ACOT4Q8N9L9 421 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 FAR1Q8WVX9 515 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 ECHDC3Q96DC8 303 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 METTL2AQ96IZ6 378 aaKnown RBP13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 MKRN2Q9H000 416 aaKnown RBP13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 TNFRSF12AQ9NP84 129 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 HCN3Q9P1Z3 774 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 CERS1P27544 350 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 TAS2R38P59533 333 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 SHC2P98077 582 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 RUNDC3AQ59EK9 446 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 PDZK1Q5T2W1 519 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 SNX29P2Q8IUI4 249 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 RASGRP3Q8IV61 690 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 MCHR1Q99705 422 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 CHCHD6Q9BRQ6 235 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 UCK2Q9BZX2 261 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 CLMPQ9H6B4 373 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 CPNE7Q9UBL6 633 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 CLEC3AO75596 197 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 PCSK6P29122 969 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 CD6P30203 668 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 CSTF2P33240 577 aaKnown RBP eCLIP13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 METAP1P53582 386 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 KIR2DS3Q14952 304 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 RGNQ15493 299 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 ADAMTS19Q8TE59 1207 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 ISOC1Q96CN7 298 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 TMEM19Q96HH6 336 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 FCRL4Q96PJ5 515 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 SLC6A16Q9GZN6 736 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 FGF22Q9HCT0 170 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 MAP10Q9P2G4 905 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 BTBD3Q9Y2F9 522 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 ENTPD2Q9Y5L3 495 aa13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 NUP214P35658 2090 aaPredicted RBP13.51□□□□□ -0.25
SHROOM1-203ENST00000378679 A0A1B0GTW7 788 aa13.5□□□□□ -0.25
SHROOM1-203ENST00000378679 SLC5A10A0PJK1 596 aa13.5□□□□□ -0.25
SHROOM1-203ENST00000378679 CCNKO75909 580 aa13.5□□□□□ -0.25
SHROOM1-203ENST00000378679 TNFRSF1BP20333 461 aa13.5□□□□□ -0.25
SHROOM1-203ENST00000378679 PSMA1P25786 263 aaKnown RBP13.5□□□□□ -0.25
SHROOM1-203ENST00000378679 GABRA3P34903 492 aa13.5□□□□□ -0.25
SHROOM1-203ENST00000378679 PFN3P60673 137 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms