RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 C1QTNF3Q9BXJ4 246 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 MUC13Q9H3R2 512 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 ZNF556Q9HAH1 456 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 TMCC3Q9ULS5 477 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 PPT2Q9UMR5 302 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 SHROOM3Q8TF72 1996 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 RNF103-CHMP3A0A140T963 221 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 G3V2L1 256 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 KIF1CO43896 1103 aaKnown RBP8.68□□□□□ -1.02
UPF2-202ENST00000357604 TRPC1P48995 793 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 CCSMST1Q4G0I0 132 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 BNC2Q6ZN30 1099 aaPredicted RBP8.68□□□□□ -1.02
UPF2-202ENST00000357604 SLC35C2Q9NQQ7 365 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.68□□□□□ -1.02
UPF2-202ENST00000357604 NTN3O00634 580 aaPredicted RBP8.68□□□□□ -1.02
UPF2-202ENST00000357604 EDF1O60869 148 aaKnown RBP8.68□□□□□ -1.02
UPF2-202ENST00000357604 FAM107AO95990 144 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 MATN1P21941 496 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 CALB2P22676 271 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 SHBQ15464 509 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 DHDDSQ86SQ9 333 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 ZNF473Q8WTR7 871 aaKnown RBP8.68□□□□□ -1.02
UPF2-202ENST00000357604 TMEM234Q8WY98 164 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 SPDL1Q96EA4 605 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 SCNM1Q9BWG6 230 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 LHPPQ9H008 270 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 SACM1LQ9NTJ5 587 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 KLF13Q9Y2Y9 288 aaPredicted RBP8.68□□□□□ -1.02
UPF2-202ENST00000357604 CDK2AP1O14519 115 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 AP3D1O14617 1153 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 TYROBPO43914 113 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 E2F6O75461 281 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 FGF3P11487 239 aaPredicted RBP8.68□□□□□ -1.02
UPF2-202ENST00000357604 MAGEA8P43361 318 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 KCNJ2P63252 427 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 ZNF630Q2M218 657 aaPredicted RBP8.68□□□□□ -1.02
UPF2-202ENST00000357604 UNQ6494/PRO21346Q6UXR6 183 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 ARHGAP22Q7Z5H3 698 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 PELI3Q8N2H9 469 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 ZNF740Q8NDX6 193 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 ROPN1LQ96C74 230 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 MS4A6EQ96DS6 147 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 NSUN5Q96P11 429 aaKnown RBP8.68□□□□□ -1.02
UPF2-202ENST00000357604 GSTO2Q9H4Y5 243 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 CCDC167Q9P0B6 97 aa8.68□□□□□ -1.02
UPF2-202ENST00000357604 NYNRINQ9P2P1 1898 aaKnown RBP8.68□□□□□ -1.02
UPF2-202ENST00000357604 TFECO14948 347 aaPredicted RBP8.67□□□□□ -1.02
UPF2-202ENST00000357604 NPPAP01160 153 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 ITIH1P19827 911 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 EPHA3P29320 983 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 SH3BP2P78314 561 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 CRB2Q5IJ48 1285 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 PATL1Q86TB9 770 aaKnown RBP8.67□□□□□ -1.02
UPF2-202ENST00000357604 MISPQ8IVT2 679 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 SLC15A4Q8N697 577 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 NUP43Q8NFH3 380 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 BBS10Q8TAM1 723 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 STT3BQ8TCJ2 826 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 AKTIPQ9H8T0 292 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 PCDHA9Q9Y5H5 950 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 LRIT2A6NDA9 550 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 AKAP8O43823 692 aaKnown RBP8.67□□□□□ -1.02
UPF2-202ENST00000357604 SOX11P35716 441 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 CCT3P49368 545 aaKnown RBP8.67□□□□□ -1.02
UPF2-202ENST00000357604 MAT1AQ00266 395 aaKnown RBP8.67□□□□□ -1.02
UPF2-202ENST00000357604 FOLH1Q04609 750 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 VAC14Q08AM6 782 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 RIPOR1Q6ZS17 1223 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 GPR155Q7Z3F1 870 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 PROSER1Q86XN7 944 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.67□□□□□ -1.021e-10■■■■■ 30.6
UPF2-202ENST00000357604 SLC46A1Q96NT5 459 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 SLC35A5Q9BS91 424 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 ZCCHC3Q9NUD5 404 aaKnown RBP8.67□□□□□ -1.02
UPF2-202ENST00000357604 LIPT1Q9Y234 373 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 IFT52Q9Y366 437 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 ABCB7O75027 752 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 CHRNGP07510 517 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 PWWP2BQ6NUJ5 590 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 PAPD4Q6PIY7 484 aaKnown RBP8.67□□□□□ -1.02
UPF2-202ENST00000357604 GK5Q6ZS86 529 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 SCAIQ8N9R8 606 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 TSPEARQ8WU66 669 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 ZDHHC2Q9UIJ5 367 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 PDE4DIPQ5VU43 2346 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 OR7A17O14581 309 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 TRAPPC6AO75865 159 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 STT3AP46977 705 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 BNIP2Q12982 314 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 TRAF3Q13114 568 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 C16orf72Q14CZ0 275 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 SAMD4BQ5PRF9 694 aaKnown RBP8.67□□□□□ -1.02
UPF2-202ENST00000357604 FAM20CQ8IXL6 584 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 VWA5B2Q8N398 1253 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 ORAI3Q9BRQ5 295 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 UGT2B28Q9BY64 529 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 PRRG3Q9BZD7 231 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 ACOX3O15254 700 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 CREG1O75629 220 aa8.67□□□□□ -1.02
UPF2-202ENST00000357604 JUNP05412 331 aaKnown RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms