RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 RETP07949 1114 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 PVALBP20472 110 aaPredicted RBP18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 WNT7BP56706 349 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 ENPP2Q13822 863 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 PLPP4Q5VZY2 271 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 PSAPL1Q6NUJ1 521 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 SPATC1Q76KD6 591 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 NR4A3Q92570 626 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 COQ10AQ96MF6 247 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 RBPJLQ9UBG7 517 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 PCTPQ9UKL6 214 aa18.75■□□□□ 0.59
CCDC88B-202ENST00000356786 ZNF821O75541 412 aaPredicted RBP18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 IL12BP29460 328 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 ADH7P40394 386 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 LRRC69Q6ZNQ3 347 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 PRSS58Q8IYP2 241 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 ACBD7Q8N6N7 88 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 OR6Q1Q8NGQ2 317 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 LILRB4Q8NHJ6 448 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 C20orf27Q9GZN8 174 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 GSTO2Q9H4Y5 243 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 NUP98P52948 1817 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 TEX13DA0A0J9YY54 714 aaPredicted RBP18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 CPOXP36551 454 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 ERVPABLB-1P60509 514 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 BRAT1Q6PJG6 821 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 UMODL1-AS1Q8N2C9 162 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 OR2AJ1Q8NGZ0 328 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 NUS1Q96E22 293 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 PSKH2Q96QS6 385 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 IL12RB2Q99665 862 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 IGSF5Q9NSI5 407 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 OARD1Q9Y530 152 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 MEIOCA2RUB1 952 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 NFATC1O95644 943 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 IL3P08700 152 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 CRHBPP24387 322 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 MAT2AP31153 395 aaKnown RBP18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 GCGRP47871 477 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 LIPJQ5W064 366 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 RBM23Q86U06 439 aaKnown RBP18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 ALDH16A1Q8IZ83 802 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 LNX2Q8N448 690 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 KLK6Q92876 244 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 TMEM168Q9H0V1 697 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 SARDHQ9UL12 918 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 OR12D1P0DN82 309 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 GPX3P22352 226 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 CHMP24386 653 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 TIA1P31483 386 aaKnown RBP eCLIP18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 CTBP2P56545 445 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 ZNF789Q5FWF6 425 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 CDKL4Q5MAI5 379 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 CLECL1Q8IZS7 167 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 CHCHD4Q8N4Q1 142 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 RHOXF1Q8NHV9 184 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 CHPT1Q8WUD6 406 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 ERVK-19Q9WJR5 959 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 PCDHB14Q9Y5E9 798 aa18.74■□□□□ 0.59
CCDC88B-202ENST00000356786 MYO10Q9HD67 2058 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 BLOC1S5-TXNDC5H3BN57 136 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 ALPPL2P10696 532 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 ETFAP13804 333 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 LAG3P18627 525 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 ARF3P61204 181 aaPredicted RBP18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 ARF1P84077 181 aaKnown RBP18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 GXYLT1Q4G148 440 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 NSMAFQ92636 917 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 GAL3ST3Q96A11 431 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 FUBP1Q96AE4 644 aaKnown RBP18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 TMEM5Q9Y2B1 443 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 RHEBQ15382 184 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 HMGN2P46Q86SG4 172 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 NPAS4Q8IUM7 802 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 FBXO15Q8NCQ5 510 aaPredicted RBP18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 FGF4P08620 206 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 EDNRBP24530 442 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 RPL19P84098 196 aaKnown RBP18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 PNLDC1Q8NA58 520 aaKnown RBP18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 DPEP2Q9H4A9 486 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 ACSL6Q9UKU0 697 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 TLX3O43711 291 aaPredicted RBP18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 TNFRSF1BP20333 461 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 MTNR1AP48039 350 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 FOXA1P55317 472 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 RAB5BP61020 215 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 OR51A7Q8NH64 312 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 ARNTL2Q8WYA1 636 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 MAL2Q969L2 176 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 IL37Q9NZH6 218 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 ABCD2Q9UBJ2 740 aa18.73■□□□□ 0.59
CCDC88B-202ENST00000356786 CRYBG1Q9Y4K1 1723 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 SRCP12931 536 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 CHAF1BQ13112 559 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 GDPGP1Q6ZNW5 385 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 C1orf74Q96LT6 269 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 VAPAQ9P0L0 249 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 COPZ2Q9P299 210 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 UBXN7O94888 489 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 ZNF8P17098 575 aaPredicted RBP18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms