RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 MMP2P08253 660 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 ZNF3P17036 446 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 YAP1P46937 504 aaKnown RBP9.67□□□□□ -0.86
USP54-201ENST00000339859 ARF3P61204 181 aaPredicted RBP9.67□□□□□ -0.86
USP54-201ENST00000339859 TRIM25Q14258 630 aaKnown RBP9.67□□□□□ -0.86
USP54-201ENST00000339859 LARP4Q71RC2 724 aaKnown RBP eCLIP9.67□□□□□ -0.86
USP54-201ENST00000339859 ZNF534Q76KX8 674 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 FAM81AQ8TBF8 368 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 SH3YL1Q96HL8 342 aaPredicted RBP9.67□□□□□ -0.86
USP54-201ENST00000339859 ACTRT3Q9BYD9 372 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 SOX17Q9H6I2 414 aaPredicted RBP9.67□□□□□ -0.86
USP54-201ENST00000339859 FGF22Q9HCT0 170 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 FAM25AB3EWG3 89 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 FAM25CB3EWG5 89 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 FAM25GB3EWG6 89 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 GSC2O15499 205 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 TIPRLO75663 272 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 RCBTB2O95199 551 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 TNFAIP8O95379 198 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 H1F0P07305 194 aaKnown RBP9.67□□□□□ -0.86
USP54-201ENST00000339859 GLB1P16278 677 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 MRPS35P82673 323 aaKnown RBP9.67□□□□□ -0.86
USP54-201ENST00000339859 FOXC1Q12948 553 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 TARDBPQ13148 414 aaKnown RBP eCLIP9.67□□□□□ -0.86
USP54-201ENST00000339859 INAQ16352 499 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 GTF2IRD2BQ6EKJ0 949 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 GTF2IRD2Q86UP8 949 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 HPS6Q86YV9 775 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 DDIT4LQ96D03 193 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 FCRL4Q96PJ5 515 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 HIST1H2AAQ96QV6 131 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 OSBPL11Q9BXB4 747 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 CKLFQ9UBR5 152 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 SNX11Q9Y5W9 270 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 H0Y8X5 98 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 KRT36O76013 467 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 SLCO2B1O94956 709 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 GPR3P46089 330 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 VASPP50552 380 aaPredicted RBP9.67□□□□□ -0.86
USP54-201ENST00000339859 DLX2Q07687 328 aaPredicted RBP9.67□□□□□ -0.86
USP54-201ENST00000339859 NAIF1Q69YI7 327 aaPredicted RBP9.67□□□□□ -0.86
USP54-201ENST00000339859 KIAA1211LQ6NV74 962 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 OR4N5Q8IXE1 308 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 OR51Q1Q8NH59 317 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 OR14L1PQ8NHC6 308 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 TSC22D3Q99576 134 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 ADAM29Q9UKF5 820 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 PADI1Q9ULC6 663 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 U3KQV3 271 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 IGHV1OR15-9A0A0B4J2B8 117 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 ZFAND5O76080 213 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 CR2P20023 1033 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 CLDN8P56748 225 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 ERVPABLB-1P60509 514 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 PSPHP78330 225 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 RCAN2Q14206 197 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 AMIGO2Q86SJ2 522 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 ETFBKMTQ8IXQ9 262 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 MEIOBQ8N635 442 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 OR2L3Q8NG85 312 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 OR7G3Q8NG95 312 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 C19orf43Q9BQ61 176 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 TRIM2Q9C040 744 aa9.67□□□□□ -0.86
USP54-201ENST00000339859 PSMB5P28074 263 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 TEAD1P28347 426 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 REEP5Q00765 189 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 RBBP4Q09028 425 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 ITGADQ13349 1161 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 C6orf132Q5T0Z8 1188 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 BMP8AQ7Z5Y6 402 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 ACOT4Q8N9L9 421 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 ZNF540Q8NDQ6 660 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 OR52B6Q8NGF0 335 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 TEX101Q9BY14 249 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 EHD1Q9H4M9 534 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 AIG1Q9NVV5 245 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 EURLQ9NYK6 297 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 MAN2B2Q9Y2E5 1009 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 PTGES3LE9PB15 166 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 DBIP07108 87 aaKnown RBP9.66□□□□□ -0.86
USP54-201ENST00000339859 CYP4B1P13584 511 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 DDCP20711 480 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 OR2B6P58173 313 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 CLRN1P58418 232 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 HSF2Q03933 536 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 FAM217AQ8IXS0 508 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 OR8J3Q8NGG0 315 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 OR10Q1Q8NGQ4 319 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 OR5K1Q8NHB7 308 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 SLC37A2Q8TED4 501 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 UBTD2Q8WUN7 234 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 ZBTB20Q9HC78 741 aaPredicted RBP9.66□□□□□ -0.86
USP54-201ENST00000339859 PTGFRNQ9P2B2 879 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 DNAJB9Q9UBS3 223 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 LOXL2Q9Y4K0 774 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 PRKAR1AP10644 381 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 DCAF7P61962 342 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 GANABQ14697 944 aaKnown RBP9.66□□□□□ -0.86
USP54-201ENST00000339859 C11orf88Q6PI97 169 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 RAB11FIP2Q7L804 512 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms