RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SLC15A5A6NIM6 579 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 KINO60870 393 aaKnown RBP2.76□□□□□ -1.97
HMGB1-201ENST00000326004 PRDM1O75626 825 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 EPOP01588 193 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 CT45A8P0DMV1 189 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 CT45A9P0DMV2 189 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 PCP11498 1178 aaKnown RBP2.76□□□□□ -1.97
HMGB1-201ENST00000326004 SELEP16581 610 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 STMN1P16949 149 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 CYP3A5P20815 502 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 ZFP36L2P47974 494 aaKnown RBP2.76□□□□□ -1.97
HMGB1-201ENST00000326004 FHITP49789 147 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 TNFSF10P50591 281 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 ADARP55265 1226 aaKnown RBP2.76□□□□□ -1.97
HMGB1-201ENST00000326004 KCNK10P57789 538 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 SRPXP78539 464 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 RBBP4Q09028 425 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 RAPSNQ13702 412 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 CT45A2Q5DJT8 189 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 C1orf189Q5VU69 101 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 CARM1Q86X55 608 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 RNF130Q86XS8 419 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 TBC1D10CQ8IV04 446 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 PHC2Q8IXK0 858 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 SIDT2Q8NBJ9 832 aaKnown RBP2.76□□□□□ -1.97
HMGB1-201ENST00000326004 SPC24Q8NBT2 197 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 CLEC1AQ8NC01 280 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 CCDC197Q8NCU1 140 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 TRPV3Q8NET8 790 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 GOLGA5Q8TBA6 731 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 MIPOL1Q8TD10 442 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 GPR148Q8TDV2 347 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 PRCCQ92733 491 aaPredicted RBP2.76□□□□□ -1.97
HMGB1-201ENST00000326004 HAS2Q92819 552 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 EEF2KMTQ96G04 330 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 CABS1Q96KC9 395 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 ALKBH3Q96Q83 286 aaPredicted RBP2.76□□□□□ -1.97
HMGB1-201ENST00000326004 ERGIC2Q96RQ1 377 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 S1PR3Q99500 378 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 ATF6BQ99941 703 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 CHCHD5Q9BSY4 110 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 STRADBQ9C0K7 418 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 EGLN1Q9GZT9 426 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 TUBB1Q9H4B7 451 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 MARCH7Q9H992 704 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 CTSZQ9UBR2 303 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 PSORS1C1Q9UIG5 152 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 EXOC7Q9UPT5 735 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 EXOC6BQ9Y2D4 811 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 SH3GLB1Q9Y371 365 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 CEP350Q5VT06 3117 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 BCL9LQ86UU0 1499 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 PHLPP1O60346 1717 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 FHOD3Q2V2M9 1422 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 ROBO1Q9Y6N7 1651 aa2.76□□□□□ -1.97
HMGB1-201ENST00000326004 ABCA8O94911 1581 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 KDM5CP41229 1560 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 VWDEQ8N2E2 1590 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 SRRM4A7MD48 611 aaKnown RBP2.75□□□□□ -1.97
HMGB1-201ENST00000326004 ARHGEF33A8MVX0 844 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 A8MXK9 166 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 PSMD3O43242 534 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 B4GAT1O43505 415 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 CSDE1O75534 798 aaKnown RBP2.75□□□□□ -1.97
HMGB1-201ENST00000326004 POP4O95707 220 aaKnown RBP2.75□□□□□ -1.97
HMGB1-201ENST00000326004 HPRP00739 348 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 LYNP07948 512 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 FERP16591 822 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 GLRA1P23415 457 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 OXTRP30559 389 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 STIP1P31948 543 aaKnown RBP2.75□□□□□ -1.97
HMGB1-201ENST00000326004 RIDAP52758 137 aaKnown RBP2.75□□□□□ -1.97
HMGB1-201ENST00000326004 MS4A2Q01362 244 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 PAX8Q06710 450 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 NPRL3Q12980 569 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 RPA4Q13156 261 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 GIT2Q14161 759 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 FASTKQ14296 549 aaKnown RBP2.75□□□□□ -1.97
HMGB1-201ENST00000326004 STX1AQ16623 288 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 TEX35Q5T0J7 233 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 CAPN13Q6MZZ7 669 aaPredicted RBP2.75□□□□□ -1.97
HMGB1-201ENST00000326004 PAQR6Q6TCH4 344 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 B3GLCTQ6Y288 498 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 TCP11Q8WWU5 503 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 KRT35Q92764 455 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 FAM46BQ96A09 425 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 CCDC47Q96A33 483 aaKnown RBP2.75□□□□□ -1.97
HMGB1-201ENST00000326004 TBC1D31Q96DN5 1066 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 PSMB7Q99436 277 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 FAM213AQ9BRX8 229 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 UBXN6Q9BZV1 441 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 MOB1AQ9H8S9 216 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 IL1RAPQ9NPH3 570 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 DNAJC11Q9NVH1 559 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 GTSE1Q9NYZ3 720 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 PAK5Q9P286 719 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 CCDC88BA6NC98 1476 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 ATP10AO60312 1499 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 RTEL1-TNFRSF6BF6WH68 1400 aa2.75□□□□□ -1.97
HMGB1-201ENST00000326004 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP2.74□□□□□ -1.978e-9■■■□□ 17.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms