RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 SLC22A31A6NKX4 558 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 SOX1O00570 391 aaPredicted RBP13.34□□□□□ -0.27
CSPG4-201ENST00000308508 KHNYNO15037 678 aaKnown RBP13.34□□□□□ -0.27
CSPG4-201ENST00000308508 RHCEP18577 417 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 NOXA1Q86UR1 476 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 HOXB13Q92826 284 aaPredicted RBP13.34□□□□□ -0.27
CSPG4-201ENST00000308508 RPL10LQ96L21 214 aaKnown RBP13.34□□□□□ -0.27
CSPG4-201ENST00000308508 SUV39H2Q9H5I1 410 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 CLEC3AO75596 197 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 IL33O95760 270 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 ASPAP45381 313 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 MLLT10P55197 1068 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 RAB11BQ15907 218 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 CILP2Q8IUL8 1156 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 G6PC3Q9BUM1 346 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 KCNH6Q9H252 994 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 PTGES2Q9H7Z7 377 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 METTL7AQ9H8H3 244 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 ACSL6Q9UKU0 697 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 RNF215Q9Y6U7 377 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 CCDC163A0A0D9SF12 145 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 EEF1E1-BLOC1S5C9J1V9 151 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 H3BUI4 141 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 GAS6Q14393 721 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 OR5T1Q8NG75 326 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 ZNF436Q9C0F3 470 aaPredicted RBP13.34□□□□□ -0.27
CSPG4-201ENST00000308508 SPDEFO95238 335 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 AHSGP02765 367 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 CD6P30203 668 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 RPS13P62277 151 aaKnown RBP13.34□□□□□ -0.27
CSPG4-201ENST00000308508 C1orf94Q6P1W5 598 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 OR8J1Q8NGP2 316 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 WFIKKN2Q8TEU8 576 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 FAM46BQ96A09 425 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 GPR20Q99678 358 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 TAC3Q9UHF0 121 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 WDPCPO95876 746 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 PLP2Q04941 152 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 NCBP2-AS2Q69YL0 99 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 TMPRSS9Q7Z410 1059 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 LILRB2Q8N423 598 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 CCDC71LQ8N9Z2 235 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 CMASQ8NFW8 434 aaPredicted RBP13.34□□□□□ -0.27
CSPG4-201ENST00000308508 C3orf49Q96BT1 292 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 MCHR1Q99705 422 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 YARS2Q9Y2Z4 477 aaKnown RBP13.34□□□□□ -0.27
CSPG4-201ENST00000308508 TECPR2O15040 1411 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 IRS2Q9Y4H2 1338 aa13.33□□□□□ -0.27
CSPG4-201ENST00000308508 FUOMA2VDF0 154 aa13.33□□□□□ -0.27
CSPG4-201ENST00000308508 MYF6P23409 242 aa13.33□□□□□ -0.27
CSPG4-201ENST00000308508 PTH2RP49190 550 aa13.33□□□□□ -0.27
CSPG4-201ENST00000308508 OC90Q02509 493 aaPredicted RBP13.33□□□□□ -0.27
CSPG4-201ENST00000308508 NPRL3Q12980 569 aa13.33□□□□□ -0.27
CSPG4-201ENST00000308508 FLYWCH1Q4VC44 716 aa13.33□□□□□ -0.27
CSPG4-201ENST00000308508 ZNF678Q5SXM1 525 aa13.33□□□□□ -0.27
CSPG4-201ENST00000308508 MLIPQ5VWP3 458 aa13.33□□□□□ -0.27
CSPG4-201ENST00000308508 FUT10Q6P4F1 479 aa13.33□□□□□ -0.27
CSPG4-201ENST00000308508 TEX19Q8NA77 164 aa13.33□□□□□ -0.27
CSPG4-201ENST00000308508 CHFRQ96EP1 664 aa13.33□□□□□ -0.27
CSPG4-201ENST00000308508 P2RY13Q9BPV8 354 aa13.33□□□□□ -0.27
CSPG4-201ENST00000308508 TLE6Q9H808 572 aa13.33□□□□□ -0.27
CSPG4-201ENST00000308508 WDR6Q9NNW5 1121 aaKnown RBP13.33□□□□□ -0.27
CSPG4-201ENST00000308508 KLHL21Q9UJP4 597 aa13.33□□□□□ -0.27
CSPG4-201ENST00000308508 CLEC4EQ9ULY5 219 aa13.33□□□□□ -0.27
CSPG4-201ENST00000308508 A0A1B0GV50 99 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 FAM230AA0A1W2PPH8 454 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 F5H5P2 479 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 ZNF8P17098 575 aaPredicted RBP13.33□□□□□ -0.28
CSPG4-201ENST00000308508 VIPR1P32241 457 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 CD79BP40259 229 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 DEFA6Q01524 100 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 RAB31Q13636 194 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 AARDQ4LEZ3 155 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 CNN2Q99439 309 aaKnown RBP13.33□□□□□ -0.28
CSPG4-201ENST00000308508 REEP4Q9H6H4 257 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 POPDC3Q9HBV1 291 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 SLC38A8A6NNN8 435 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 PHYHO14832 338 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 BDKRB2P30411 391 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 COQ5Q5HYK3 327 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 ZNF619Q8N2I2 560 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 OR5H2Q8NGV7 314 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 SAMD11Q96NU1 681 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 WDR77Q9BQA1 342 aaPredicted RBP13.33□□□□□ -0.28
CSPG4-201ENST00000308508 KCNJ16Q9NPI9 418 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 UPK1BO75841 260 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 ACTR1BP42025 376 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 HTD2P86397 168 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 NFATC3Q12968 1075 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 SLC36A3Q495N2 470 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 RNASE10Q5GAN6 216 aaKnown RBP13.33□□□□□ -0.28
CSPG4-201ENST00000308508 TMEM234Q8WY98 164 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 OSBPL2Q9H1P3 480 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 DKKL1Q9UK85 242 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 NUBP2Q9Y5Y2 271 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 ADM5C9JUS6 153 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 HCRTR2O43614 444 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 SCNN1AP37088 669 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 ZNF84P51523 738 aa13.33□□□□□ -0.28
CSPG4-201ENST00000308508 HNRNPFP52597 415 aaKnown RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms