RNA–Protein interactions for RNA: ENST00000307859.4

TRIM40-205, Transcript of tripartite motif containing 40, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TRIM40, Length 1,640 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-205ENST00000307859 VPS50Q96JG6 964 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 AMDHD1Q96NU7 426 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 MIR1-1HGQ9H1L0 117 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 DUSP15Q9H1R2 295 aaPredicted RBP11.24□□□□□ -0.61
TRIM40-205ENST00000307859 PARD6AQ9NPB6 346 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 CES1P1Q9UKY3 287 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 CACNA1EQ15878 2313 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 URADA6NGE7 173 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 LILRA5A6NI73 299 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 MYO1GB0I1T2 1018 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 EI24O14681 340 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 PROM1O43490 865 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 NOBOXO60393 691 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 PRKRAO75569 313 aaKnown RBP11.24□□□□□ -0.61
TRIM40-205ENST00000307859 GCM2O75603 506 aaPredicted RBP11.24□□□□□ -0.61
TRIM40-205ENST00000307859 ZNF682O95780 498 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 CST1P01037 141 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 LYNP07948 512 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 ARAFP10398 606 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 PVRP15151 417 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 ZNF23P17027 643 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 CDK9P50750 372 aaKnown RBP11.24□□□□□ -0.61
TRIM40-205ENST00000307859 PPP1CAP62136 330 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 BTN3A2P78410 334 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 TXNL4AP83876 142 aaKnown RBP11.24□□□□□ -0.61
TRIM40-205ENST00000307859 HSPB3Q12988 150 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 ELOAQ14241 798 aaKnown RBP11.24□□□□□ -0.61
TRIM40-205ENST00000307859 SUZ12Q15022 739 aaKnown RBP11.24□□□□□ -0.61
TRIM40-205ENST00000307859 CEBPEQ15744 281 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.24□□□□□ -0.61
TRIM40-205ENST00000307859 MANEAQ5SRI9 462 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 SLC48A1Q6P1K1 146 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 UGT2A3Q6UWM9 527 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 SLC30A8Q8IWU4 369 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 ARL14Q8N4G2 192 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 ZFP28Q8NHY6 868 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 KLHL6Q8WZ60 621 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 N4BP2L2Q92802 583 aaPredicted RBP11.24□□□□□ -0.61
TRIM40-205ENST00000307859 MAL2Q969L2 176 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 TBC1D20Q96BZ9 403 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 SERINC2Q96SA4 455 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 TMEM121BQ9BXQ6 578 aaPredicted RBP11.24□□□□□ -0.61
TRIM40-205ENST00000307859 SEMA6CQ9H3T2 930 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 GLIPR2Q9H4G4 154 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 IL1RAPQ9NPH3 570 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 MAP4K5Q9Y4K4 846 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 SNX11Q9Y5W9 270 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 SNX8Q9Y5X2 465 aa11.24□□□□□ -0.61
TRIM40-205ENST00000307859 WDR87Q6ZQQ6 2873 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 LOC105369274A0A096LPK9 316 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 LOC102723532A0A0G2JNH3 316 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 LMO7DNF2Z398 122 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 H0YGG7 62 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 FOXD2O60548 495 aaPredicted RBP11.23□□□□□ -0.61
TRIM40-205ENST00000307859 B4GALT2O60909 372 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 UBTFL6P0CB48 400 aaPredicted RBP11.23□□□□□ -0.61
TRIM40-205ENST00000307859 NTSP30990 170 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 HOXA6P31267 233 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 CLCN2P51788 898 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 GTF2A1P52655 376 aaPredicted RBP11.23□□□□□ -0.61
TRIM40-205ENST00000307859 DSTNP60981 165 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 ARF3P61204 181 aaPredicted RBP11.23□□□□□ -0.61
TRIM40-205ENST00000307859 HNRNPKP61978 463 aaKnown RBP eCLIP11.23□□□□□ -0.61
TRIM40-205ENST00000307859 SNRPNP63162 240 aaKnown RBP11.23□□□□□ -0.61
TRIM40-205ENST00000307859 SCARB2Q14108 478 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 C18orf63Q68DL7 685 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 FRMPD2BQ6IN97 320 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 TMEM214Q6NUQ4 689 aaKnown RBP11.23□□□□□ -0.61
TRIM40-205ENST00000307859 ARMC6Q6NXE6 501 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 TMEM64Q6YI46 380 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 GALNT10Q86SR1 603 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 CARM1Q86X55 608 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 ZDHHC21Q8IVQ6 265 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 TMEFF1Q8IYR6 380 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 OR4N4Q8N0Y3 316 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 SVOPLQ8N434 492 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 RERGQ96A58 199 aaPredicted RBP11.23□□□□□ -0.61
TRIM40-205ENST00000307859 CNRIP1Q96F85 164 aaPredicted RBP11.23□□□□□ -0.61
TRIM40-205ENST00000307859 MAPKAP1Q9BPZ7 522 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 KLHL25Q9H0H3 589 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 PRDM9Q9NQV7 894 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 PHF11Q9UIL8 331 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 FBXW2Q9UKT8 454 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 DOLKQ9UPQ8 538 aa11.23□□□□□ -0.61
TRIM40-205ENST00000307859 ANKRD11Q6UB99 2663 aaPredicted RBP11.23□□□□□ -0.61
TRIM40-205ENST00000307859 CCDC163A0A0D9SF12 145 aa11.22□□□□□ -0.61
TRIM40-205ENST00000307859 TMEM229AB2RXF0 380 aa11.22□□□□□ -0.61
TRIM40-205ENST00000307859 PGRMC2O15173 223 aa11.22□□□□□ -0.61
TRIM40-205ENST00000307859 ZSCAN9O15535 394 aaPredicted RBP11.22□□□□□ -0.61
TRIM40-205ENST00000307859 AQP9O43315 295 aa11.22□□□□□ -0.61
TRIM40-205ENST00000307859 SH3BP5O60239 455 aa11.22□□□□□ -0.61
TRIM40-205ENST00000307859 PRAMEF10O60809 474 aa11.22□□□□□ -0.61
TRIM40-205ENST00000307859 UBXN7O94888 489 aa11.22□□□□□ -0.61
TRIM40-205ENST00000307859 NR2F6P10588 404 aa11.22□□□□□ -0.61
TRIM40-205ENST00000307859 TYRP1P17643 537 aa11.22□□□□□ -0.61
TRIM40-205ENST00000307859 MAGEA8P43361 318 aa11.22□□□□□ -0.61
TRIM40-205ENST00000307859 PRIM2P49643 509 aa11.22□□□□□ -0.61
TRIM40-205ENST00000307859 CHN2P52757 468 aa11.22□□□□□ -0.61
TRIM40-205ENST00000307859 CASP9P55211 416 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms