RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 LRRC8AQ8IWT6 810 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 MMP21Q8N119 569 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 LRRC25Q8N386 305 aaPredicted RBP13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 ZNF321PQ8N8H1 164 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 NEIL3Q8TAT5 605 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 ZNF721Q8TF20 911 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 SLCO2A1Q92959 643 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 UBE2E3Q969T4 207 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 SPACA9Q96E40 222 aaPredicted RBP13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 WDR34Q96EX3 536 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 CFAP36Q96G28 342 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 PWWP2AQ96N64 755 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 DERL2Q9GZP9 239 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 LIME1Q9H400 295 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 PLAC1Q9HBJ0 212 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 PRDM7Q9NQW5 492 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 WWOXQ9NZC7 414 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 ZNF629Q9UEG4 869 aaPredicted RBP13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 JMJD1CQ15652 2540 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 FREM3P0C091 2139 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 LDB3O75112 727 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 STK16O75716 305 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 TBX6O95947 436 aaPredicted RBP13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 RAF1P04049 648 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 ENDOUP21128 410 aaKnown RBP13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 BMP5P22003 454 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 ATP5A1P25705 553 aaKnown RBP13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 SERPINB3P29508 390 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 SERPINB1P30740 379 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 TIMP3P35625 211 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 PIGAP37287 484 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 STT3AP46977 705 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 SLC12A2P55011 1212 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 PLIN5Q00G26 463 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 MGAT5Q09328 741 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 FBXW10Q5XX13 1052 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 SULT1C3Q6IMI6 304 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 TRMT10BQ6PF06 316 aaKnown RBP13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 VN1R5Q7Z5H4 357 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 LACC1Q8IV20 430 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 PM20D2Q8IYS1 436 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 ACOT4Q8N9L9 421 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 SNX31Q8N9S9 440 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 SREK1Q8WXA9 508 aaKnown RBP13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 RBM18Q96H35 190 aaKnown RBP13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 SENP5Q96HI0 755 aaPredicted RBP13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 DGAT2Q96PD7 388 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 F2RL3Q96RI0 385 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 SH3GL2Q99962 352 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 SEMA4BQ9NPR2 832 aaPredicted RBP13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 DMRT3Q9NQL9 472 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 MS4A12Q9NXJ0 267 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 SPRR3Q9UBC9 169 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 CHMP2BQ9UQN3 213 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 RPH3AQ9Y2J0 694 aaPredicted RBP13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 PPP2R2CQ9Y2T4 447 aa13.61□□□□□ -0.23
CCDC88B-201ENST00000301897 MYOCOSA0A1B0GUC4 107 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 NCF1BA6NI72 391 aaPredicted RBP13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 NCF1CA8MVU1 366 aaPredicted RBP13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 ZNF354AO60765 605 aaPredicted RBP13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 SCELO95171 688 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 ETHE1O95571 254 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 EPPINO95925 133 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 IL2RAP01589 272 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 IGKV3-11P04433 115 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 NCF1P14598 390 aaPredicted RBP13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 HIST1H1TP22492 207 aaPredicted RBP13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 CPN2P22792 545 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 CEACAM8P31997 349 aaPredicted RBP13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 TAS2R39P59534 338 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 ADAM8P78325 824 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 IGLV3-21P80748 117 aaPredicted RBP13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 TBCCQ15814 346 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 PDK4Q16654 411 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 AP5B1Q2VPB7 878 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 TBCELQ5QJ74 424 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 CHSY3Q70JA7 882 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 GPSM1Q86YR5 675 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 RELL2Q8NC24 303 aaPredicted RBP13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 BBOF1Q8ND07 529 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 TANKQ92844 425 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 ANKRD9Q96BM1 317 aaPredicted RBP13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 HSPBAP1Q96EW2 488 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 FBXL20Q96IG2 436 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 MAPKAP1Q9BPZ7 522 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 PELOQ9BRX2 385 aaKnown RBP13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 PHACTR1Q9C0D0 580 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 PRM3Q9NNZ6 103 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 ZNF490Q9ULM2 529 aaPredicted RBP13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 CBLCQ9ULV8 474 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 PSAT1Q9Y617 370 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 TEX264Q9Y6I9 313 aa13.6□□□□□ -0.23
CCDC88B-201ENST00000301897 TUBAL3A6NHL2 446 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 CAPN14A8MX76 684 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 CES2O00748 559 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 FBXO45P0C2W1 286 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 RFPL3SP0C7P2 107 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 EPXP11678 715 aa13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 TLX1P31314 330 aaPredicted RBP13.59□□□□□ -0.23
CCDC88B-201ENST00000301897 CASP2P42575 452 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms