RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 HMGN4O00479 90 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 SLC22A1O15245 554 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 SEMA7AO75326 666 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 CCNB2O95067 398 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 APODP05090 189 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 CD36P16671 472 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 CD72P21854 359 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 CBLP22681 906 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 GDI1P31150 447 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 MAT2AP31153 395 aaKnown RBP19.05■□□□□ 0.64
VPS53-201ENST00000291074 ZNF793Q6ZN11 406 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 RBM45Q8IUH3 476 aaKnown RBP19.05■□□□□ 0.64
VPS53-201ENST00000291074 TRUB1Q8WWH5 349 aaKnown RBP19.05■□□□□ 0.64
VPS53-201ENST00000291074 ZNF556Q9HAH1 456 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 A4GALTQ9NPC4 353 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 PMF1-BGLAPU3KQ54 211 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 TRBV4-1A0A0J9YWV2 114 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 C4orf51C9J302 202 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 GASTP01350 101 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 RHCEP18577 417 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 LIPAP38571 399 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 IGFN1Q86VF2 1251 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 TAGAPQ8N103 731 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 OR5D16Q8NGK9 328 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 VANGL1Q8TAA9 524 aaPredicted RBP19.04■□□□□ 0.64
VPS53-201ENST00000291074 CREB3L4Q8TEY5 395 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 JPH3Q8WXH2 748 aaPredicted RBP19.04■□□□□ 0.64
VPS53-201ENST00000291074 SH3YL1Q96HL8 342 aaPredicted RBP19.04■□□□□ 0.64
VPS53-201ENST00000291074 DPH7Q9BTV6 452 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 ARMC7Q9H6L4 198 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 NMNAT1Q9HAN9 279 aaPredicted RBP19.04■□□□□ 0.64
VPS53-201ENST00000291074 NEUROD4Q9HD90 331 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 PHPT1Q9NRX4 125 aaPredicted RBP19.04■□□□□ 0.64
VPS53-201ENST00000291074 F5P12259 2224 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 ZSCAN9O15535 394 aaPredicted RBP19.04■□□□□ 0.64
VPS53-201ENST00000291074 NADKO95544 446 aaPredicted RBP19.04■□□□□ 0.64
VPS53-201ENST00000291074 GABRB1P18505 474 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 C5AR1P21730 350 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 SSR2P43308 183 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 PSMD7P51665 324 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 PRDX1Q06830 199 aaKnown RBP19.04■□□□□ 0.64
VPS53-201ENST00000291074 ATP1A4Q13733 1029 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 KIAA1161Q6NSJ0 714 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 FGF14Q92915 247 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 QRFPRQ96P65 431 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 MYADMQ96S97 322 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 NECTIN3Q9NQS3 549 aa19.04■□□□□ 0.64
VPS53-201ENST00000291074 PRAMEF27A3QJZ7 478 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 LINC01565O15544 149 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 TBX19O60806 448 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 MFN2O95140 757 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 ALPPL2P10696 532 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 BCL6P41182 706 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 FRKP42685 505 aaPredicted RBP19.03■□□□□ 0.64
VPS53-201ENST00000291074 CCT3P49368 545 aaKnown RBP19.03■□□□□ 0.64
VPS53-201ENST00000291074 RAB28P51157 221 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 HMGA2P52926 109 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 PTGES3Q15185 160 aaKnown RBP19.03■□□□□ 0.64
VPS53-201ENST00000291074 LEXMQ3ZCV2 418 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 UBE2UQ5VVX9 321 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 OR4C11Q6IEV9 310 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 KLHL17Q6TDP4 642 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 HMGN2P46Q86SG4 172 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 TMCO5AQ8N6Q1 288 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 MKRN2Q9H000 416 aaKnown RBP19.03■□□□□ 0.64
VPS53-201ENST00000291074 IMPAD1Q9NX62 359 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 DUSP12Q9UNI6 340 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 ANHXE9PGG2 379 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 MRPS14O60783 128 aaKnown RBP19.03■□□□□ 0.64
VPS53-201ENST00000291074 CEACAM5P06731 702 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 STSP08842 583 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 SYPL1Q16563 259 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 NDUFAF5Q5TEU4 345 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 PARM1Q6UWI2 310 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 OR4D11Q8NGI4 311 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 OR14C36Q8NHC7 312 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 ZBED6CLQ96FA7 236 aaPredicted RBP19.03■□□□□ 0.64
VPS53-201ENST00000291074 NT5DC2Q9H857 520 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 TMEM165Q9HC07 324 aa19.03■□□□□ 0.64
VPS53-201ENST00000291074 A0A0A6YYD5 115 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 A0A1W2PQU0 124 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 LRIT2A6NDA9 550 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 CLCA1A8K7I4 914 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 PDZK1P1A8MUH7 402 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 M0R082 166 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 ADH1BP00325 375 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 CTSKP43235 329 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 KCNC4Q03721 635 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 DMPKQ09013 629 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 KRT33BQ14525 404 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 SLC30A8Q8IWU4 369 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 OR52E1Q8NGJ3 308 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 DYNC2LI1Q8TCX1 351 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 BCL7BQ9BQE9 202 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 ITPAQ9BY32 194 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 DDX31Q9H8H2 851 aaKnown RBP19.02■□□□□ 0.64
VPS53-201ENST00000291074 PLCXD1Q9NUJ7 323 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 FAIMQ9NVQ4 179 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 FBXL12Q9NXK8 326 aa19.02■□□□□ 0.64
VPS53-201ENST00000291074 TAS2R16Q9NYV7 291 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms