RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 TMEM52Q8NDY8 209 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 OR9A2Q8NGT5 310 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 GOT1L1Q8NHS2 421 aaPredicted RBP15.59■□□□□ 0.09
USP4-201ENST00000265560 ZFPM2Q8WW38 1151 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 KLHL6Q8WZ60 621 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 GAL3ST3Q96A11 431 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 CENPNQ96H22 339 aaPredicted RBP15.59■□□□□ 0.09
USP4-201ENST00000265560 FAIM2Q9BWQ8 316 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 VCX3BQ9H321 246 aa15.59■□□□□ 0.09
USP4-201ENST00000265560 FREM2Q5SZK8 3169 aa15.58■□□□□ 0.09
USP4-201ENST00000265560 CLIC3O95833 236 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 CST1P01037 141 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 CFIP05156 583 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 ALOX12P18054 663 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 CPN2P22792 545 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 PRAMEF17Q5VTA0 474 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 CPZQ66K79 652 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 SUN3Q8TAQ9 357 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 MAGEE2Q8TD90 523 aaPredicted RBP15.58■□□□□ 0.08
USP4-201ENST00000265560 ZBED6CLQ96FA7 236 aaPredicted RBP15.58■□□□□ 0.08
USP4-201ENST00000265560 C1GALT1Q9NS00 363 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 CLCA2Q9UQC9 943 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 GNGT2O14610 69 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 EI24O14681 340 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 CLOCKO15516 846 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 CAPZBP47756 277 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 LIM2P55344 173 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 ERV3-1Q14264 604 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 CAMKVQ8NCB2 501 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 SRFBP1Q8NEF9 429 aaKnown RBP15.58■□□□□ 0.08
USP4-201ENST00000265560 OR5P2Q8WZ92 322 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 C16orf58Q96GQ5 468 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 SEMA6CQ9H3T2 930 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 SMOC1Q9H4F8 434 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 TRPC4Q9UBN4 977 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 ABCG2Q9UNQ0 655 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 LRCH1Q9Y2L9 728 aa15.58■□□□□ 0.08
USP4-201ENST00000265560 RDH16O75452 317 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 TNFRSF21O75509 655 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 UMPSP11172 480 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 SHC2P98077 582 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 SYT16Q17RD7 645 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 C14orf28Q4W4Y0 310 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 MCATQ8IVS2 390 aaKnown RBP15.57■□□□□ 0.08
USP4-201ENST00000265560 C19orf47Q8N9M1 422 aaKnown RBP15.57■□□□□ 0.08
USP4-201ENST00000265560 OR52N2Q8NGI0 321 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 FAM174AQ8TBP5 190 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 XAGE5Q8WWM1 108 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 TMBIM1Q969X1 311 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 PCED1AQ9H1Q7 454 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 SERHL2Q9H4I8 314 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 ZCCHC3Q9NUD5 404 aaKnown RBP15.57■□□□□ 0.08
USP4-201ENST00000265560 AP4B1Q9Y6B7 739 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 A0A0A6YYC8 382 aaPredicted RBP15.57■□□□□ 0.08
USP4-201ENST00000265560 I3L1I5 382 aaPredicted RBP15.57■□□□□ 0.08
USP4-201ENST00000265560 M0QX08 132 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 BMP2P12643 396 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 MAT1AQ00266 395 aaKnown RBP15.57■□□□□ 0.08
USP4-201ENST00000265560 SIGLEC14Q08ET2 396 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 SCARB2Q14108 478 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 SHBQ15464 509 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 ZIK1Q3SY52 487 aaPredicted RBP15.57■□□□□ 0.08
USP4-201ENST00000265560 C11orf65Q8NCR3 313 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 PYURFQ96I23 114 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 UGT2B28Q9BY64 529 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 KCMF1Q9P0J7 381 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 GIMD1P0DJR0 217 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 NR2F6P10588 404 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 UQCRBP14927 111 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 PCSK2P16519 638 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 UQCRC2P22695 453 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 MC3RP41968 323 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 VLDLRP98155 873 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 LASP1Q14847 261 aaKnown RBP15.57■□□□□ 0.08
USP4-201ENST00000265560 SUZ12Q15022 739 aaKnown RBP15.57■□□□□ 0.08
USP4-201ENST00000265560 GCNT6Q5T4J0 391 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 SLC48A1Q6P1K1 146 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 TMEM179BQ7Z7N9 219 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 STK32CQ86UX6 486 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 AHCYL2Q96HN2 611 aaKnown RBP15.57■□□□□ 0.08
USP4-201ENST00000265560 HSH2DQ96JZ2 352 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 CES1P1Q9UKY3 287 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 RAB23Q9ULC3 237 aa15.57■□□□□ 0.08
USP4-201ENST00000265560 PLOD2O00469 737 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 ACOX3O15254 700 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 B3GALT2O43825 422 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 BCHEP06276 602 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 RETP07949 1114 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 OR12D1P0DN82 309 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 DRD2P14416 443 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 ZCCHC7Q8N3Z6 543 aaKnown RBP15.56■□□□□ 0.08
USP4-201ENST00000265560 NT5CQ8TCD5 201 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 TWSG1Q9GZX9 223 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 VNN3Q9NY84 501 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 DAPP1Q9UN19 280 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 MYO1GB0I1T2 1018 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 UPK1AO00322 258 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 FUT4P22083 530 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 NTSP30990 170 aa15.56■□□□□ 0.08
USP4-201ENST00000265560 CDK6Q00534 326 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms