RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 PSIP1O75475 530 aaKnown RBP12.05□□□□□ -0.48
LIG1-201ENST00000263274 TNFRSF21O75509 655 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 CXCL14O95715 111 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 LATS1O95835 1130 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 CLEC2LP0C7M8 214 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 BUD31P41223 144 aaPredicted RBP12.05□□□□□ -0.48
LIG1-201ENST00000263274 CAV3P56539 151 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 ST8SIA6P61647 398 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 ZNF630Q2M218 657 aaPredicted RBP12.05□□□□□ -0.48
LIG1-201ENST00000263274 LHX8Q68G74 356 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 ERAP2Q6P179 960 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 BRAT1Q6PJG6 821 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 LINC00299Q6ZSB3 139 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 ZNF367Q7RTV3 350 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 KRT73Q86Y46 540 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 TCEAL8Q8IYN2 117 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 HORMAD2Q8N7B1 307 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 SLC5A11Q8WWX8 675 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 TIFAQ96CG3 184 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 COQ8BQ96D53 544 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 ECHDC3Q96DC8 303 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 MAPKAP1Q9BPZ7 522 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 TSSK6Q9BXA6 273 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 BRF2Q9HAW0 419 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 DMRT3Q9NQL9 472 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 KLHL42Q9P2K6 505 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 TAC3Q9UHF0 121 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 GON4LQ3T8J9 2241 aa12.05□□□□□ -0.48
LIG1-201ENST00000263274 M0R3H8 397 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 RFXAPO00287 272 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 MRPS14O60783 128 aaKnown RBP12.04□□□□□ -0.48
LIG1-201ENST00000263274 POP7O75817 140 aaKnown RBP12.04□□□□□ -0.48
LIG1-201ENST00000263274 SLITRK5O94991 958 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 CH25HO95992 272 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 DGKGP49619 791 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 MLLT1Q03111 559 aaPredicted RBP12.04□□□□□ -0.48
LIG1-201ENST00000263274 KCNC3Q14003 757 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 SNAPC1Q16533 368 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 MPEG1Q2M385 716 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 CLEC12AQ5QGZ9 265 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 TUBA3EQ6PEY2 450 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 ZNF517Q6ZMY9 492 aaPredicted RBP12.04□□□□□ -0.48
LIG1-201ENST00000263274 RRM2BQ7LG56 351 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 TRIM69Q86WT6 500 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 RAB43Q86YS6 212 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 LACC1Q8IV20 430 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 OR5D16Q8NGK9 328 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 PIK3R3Q92569 461 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 PRR14Q9BWN1 585 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 COMMD3Q9UBI1 195 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 SATB2Q9UPW6 733 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 GPR52Q9Y2T5 361 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 SNX11Q9Y5W9 270 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 PLXNA4Q9HCM2 1894 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 TMEM229AB2RXF0 380 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 HSD3B1P14060 373 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 RHCEP18577 417 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 HSD3B2P26439 372 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 TIE1P35590 1138 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 RACK1P63244 317 aaKnown RBP12.04□□□□□ -0.48
LIG1-201ENST00000263274 CD83Q01151 205 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 PRKCDQ05655 676 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 TEAD2Q15562 447 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 PGBD3Q8N328 593 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 TXNDC15Q96J42 360 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 OSGEPL1Q9H4B0 414 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 PLCXD1Q9NUJ7 323 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 ANHXE9PGG2 379 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 MMP20O60882 483 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 C1orf105O95561 183 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 H1F0P07305 194 aaKnown RBP12.04□□□□□ -0.48
LIG1-201ENST00000263274 ZNF30P17039 623 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 CD72P21854 359 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 IFNA8P32881 189 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 INPP1P49441 399 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 RORCP51449 518 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 MVDP53602 400 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 LIM2P55344 173 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 NTHL1P78549 312 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 DEFB103AP81534 67 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 HNRNPA0Q13151 305 aaKnown RBP12.04□□□□□ -0.48
LIG1-201ENST00000263274 SSX1Q16384 188 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 PRSS53Q2L4Q9 553 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 TRAM1L1Q8N609 369 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 C7orf57Q8NEG2 295 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 C9orf43Q8TAL5 461 aaPredicted RBP12.04□□□□□ -0.48
LIG1-201ENST00000263274 IRF7Q92985 503 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 MACROD1Q9BQ69 325 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 EFCAB11Q9BUY7 163 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 HOXD1Q9GZZ0 328 aa12.04□□□□□ -0.48
LIG1-201ENST00000263274 YARS2Q9Y2Z4 477 aaKnown RBP12.04□□□□□ -0.48
LIG1-201ENST00000263274 FABP12A6NFH5 140 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 H7BY64 318 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 CYP17A1P05093 508 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 ATXN8OSP0DMR3 200 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 OR12D1P0DN82 309 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 RBBP4Q09028 425 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 SEC23BQ15437 767 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 TBRG1Q3YBR2 411 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 AGAP6Q5VW22 663 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms