RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 UNC80Q8N2C7 3258 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 GLYATL1P3A0A0U1RQE8 302 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 PEPDP12955 493 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 XKP51811 444 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 LIM2P55344 173 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 CDK6Q00534 326 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 FABP5Q01469 135 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 BNC1Q01954 994 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 TNK1Q13470 666 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 MBTPS1Q14703 1052 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 TMEM65Q6PI78 240 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 SLC9A6Q92581 669 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 MRPS31Q92665 395 aaKnown RBP13.69□□□□□ -0.22
SDC1-201ENST00000254351 SAP130Q9H0E3 1048 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 SLC28A3Q9HAS3 691 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 KLHL21Q9UJP4 597 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 PCDHB1Q9Y5F3 818 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 DOCK4Q8N1I0 1966 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 MYADML2A6NDP7 307 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 HNRNPCL2B2RXH8 293 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 PDPK1O15530 556 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 NTN1O95631 604 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 TRAPPC2P0DI81 140 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 TRAPPC2BP0DI82 140 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 BPIP17213 487 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 CR2P20023 1033 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 AOAHP28039 575 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 AP2S1P53680 142 aaPredicted RBP13.69□□□□□ -0.22
SDC1-201ENST00000254351 VSX2P58304 361 aaPredicted RBP13.69□□□□□ -0.22
SDC1-201ENST00000254351 VEZF1Q14119 521 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 CTXN3Q4LDR2 81 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 MLIPQ5VWP3 458 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 CXorf57Q6NSI4 855 aaKnown RBP13.69□□□□□ -0.22
SDC1-201ENST00000254351 TEX261Q6UWH6 196 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 CEACAM20Q6UY09 585 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 IFNL1Q8IU54 200 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 C2orf73Q8N5S3 287 aaPredicted RBP13.69□□□□□ -0.22
SDC1-201ENST00000254351 WBP2Q969T9 261 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 PRR14Q9BWN1 585 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 CHIAQ9BZP6 476 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 POLR2J3Q9H1A7 115 aaKnown RBP13.69□□□□□ -0.22
SDC1-201ENST00000254351 SGK2Q9HBY8 427 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 NDUFB11Q9NX14 153 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 EIF3KQ9UBQ5 218 aaKnown RBP13.69□□□□□ -0.22
SDC1-201ENST00000254351 EXO1Q9UQ84 846 aaKnown RBP13.69□□□□□ -0.22
SDC1-201ENST00000254351 U3KQ87 197 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 HTTP42858 3142 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 NUMA1Q14980 2115 aa13.69□□□□□ -0.22
SDC1-201ENST00000254351 OR2AG2A6NM03 316 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 SMAD6O43541 496 aaKnown RBP13.68□□□□□ -0.22
SDC1-201ENST00000254351 CELP19835 753 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 HLA-DMAP28067 261 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 HMGCLP35914 325 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 PER3P56645 1201 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 MRPS6P82932 125 aaKnown RBP13.68□□□□□ -0.22
SDC1-201ENST00000254351 SREBF2Q12772 1141 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 MAP4K2Q12851 820 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 HEPACAMQ14CZ8 416 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 TAF1CQ15572 869 aaPredicted RBP13.68□□□□□ -0.22
SDC1-201ENST00000254351 STK11Q15831 433 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 CCSMST1Q4G0I0 132 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 IDNKQ5T6J7 187 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 C19orf48Q6RUI8 117 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 ESX1Q8N693 406 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 DNAJB8Q8NHS0 232 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 CSGALNACT1Q8TDX6 532 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 ST8SIA2Q92186 375 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 PIGKQ92643 395 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 ASIC4Q96FT7 647 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 C5AR2Q9P296 337 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 HCSTQ9UBK5 93 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 ATP6V1HQ9UI12 483 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 SPATA2Q9UM82 520 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 NCKAP1Q9Y2A7 1128 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 LSM2Q9Y333 95 aaKnown RBP13.68□□□□□ -0.22
SDC1-201ENST00000254351 IQCMA0A1B0GVH7 501 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 ZAR1LA6NP61 321 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 GAPDHSO14556 408 aaPredicted RBP13.68□□□□□ -0.22
SDC1-201ENST00000254351 FFAR1O14842 300 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 ARHGEF15O94989 841 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 MAPKAPK2P49137 400 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 MLLT1Q03111 559 aaPredicted RBP13.68□□□□□ -0.22
SDC1-201ENST00000254351 PIN1Q13526 163 aaPredicted RBP13.68□□□□□ -0.22
SDC1-201ENST00000254351 NAE1Q13564 534 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 NCF4Q15080 339 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 GCNT6Q5T4J0 391 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 TECPR1Q7Z6L1 1165 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 SLC51BQ86UW2 128 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 LRRC17Q8N6Y2 441 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 MS4A3Q96HJ5 214 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 SORBS1Q9BX66 1292 aaKnown RBP13.68□□□□□ -0.22
SDC1-201ENST00000254351 RDH8Q9NYR8 311 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 FTSJ1Q9UET6 329 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 HEPACAM2A8MVW5 462 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 TGFB1P01137 390 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 IFNW1P05000 195 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 ICAM2P13598 275 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 ZNF30P17039 623 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 TLE2Q04725 743 aa13.68□□□□□ -0.22
SDC1-201ENST00000254351 TUSC3Q13454 348 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms