RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 WDFY4Q6ZS81 3184 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 VPS13AQ96RL7 3174 aa17.41■□□□□ 0.38
CLN3-254ENST00000637050 ASXL3Q9C0F0 2248 aa17.4■□□□□ 0.38
CLN3-254ENST00000637050 FOXS1O43638 330 aa17.4■□□□□ 0.38
CLN3-254ENST00000637050 FOLR1P15328 257 aa17.4■□□□□ 0.38
CLN3-254ENST00000637050 HTR1EP28566 365 aa17.4■□□□□ 0.38
CLN3-254ENST00000637050 OLR1P78380 273 aa17.4■□□□□ 0.38
CLN3-254ENST00000637050 GRM7Q14831 915 aa17.4■□□□□ 0.38
CLN3-254ENST00000637050 GPR19Q15760 415 aa17.4■□□□□ 0.38
CLN3-254ENST00000637050 IFNEQ86WN2 208 aa17.4■□□□□ 0.38
CLN3-254ENST00000637050 CA13Q8N1Q1 262 aa17.4■□□□□ 0.38
CLN3-254ENST00000637050 OR9A4Q8NGU2 314 aa17.4■□□□□ 0.38
CLN3-254ENST00000637050 ZFP90Q8TF47 636 aa17.4■□□□□ 0.38
CLN3-254ENST00000637050 COL25A1Q9BXS0 654 aaPredicted RBP17.4■□□□□ 0.38
CLN3-254ENST00000637050 TPT1P8Q9HAU6 139 aa17.4■□□□□ 0.38
CLN3-254ENST00000637050 BCAP29Q9UHQ4 241 aa17.4■□□□□ 0.38
CLN3-254ENST00000637050 SCN3AQ9NY46 2000 aa17.4■□□□□ 0.38
CLN3-254ENST00000637050 EVPLLA8MZ36 301 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 MYO1GB0I1T2 1018 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 TMEM150CB9EJG8 249 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 SGK494L7N484 410 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 CDX4O14627 284 aaPredicted RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 ABCB1P08183 1280 aaPredicted RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 CKMT2P17540 419 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 GPX2P18283 190 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 PPIBP23284 216 aaKnown RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 TLX1P31314 330 aaPredicted RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 GZMMP51124 257 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 MANFP55145 182 aaKnown RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 SKP1P63208 163 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 SLC14A1Q13336 389 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 SF3A2Q15428 464 aaKnown RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 CEBPEQ15744 281 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 CALHM3Q86XJ0 350 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 TRIML2Q8N7C3 387 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 OR5T3Q8NGG3 340 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 OR10A6Q8NH74 314 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 CNRIP1Q96F85 164 aaPredicted RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 CNDP2Q96KP4 475 aaKnown RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 MUC13Q9H3R2 512 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 IRAK4Q9NWZ3 460 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 USP22Q9UPT9 525 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 PCDHB3Q9Y5E6 796 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 COL5A1P20908 1838 aaPredicted RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 ADAMTS20P59510 1910 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 A0A0A6YYC8 382 aaPredicted RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 IGHV5-10-1A0A0J9YXX1 117 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 I3L1I5 382 aaPredicted RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 CYR61O00622 381 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 NTN3O00634 580 aaPredicted RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 RDH16O75452 317 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 OR2B3O76000 313 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 NSA2O95478 260 aaKnown RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 LDOC1O95751 146 aaPredicted RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 C1QCP02747 245 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 OR4D2P58180 307 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 COL9A2Q14055 689 aaPredicted RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 OR52E8Q6IFG1 317 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 PRR23CQ6ZRP0 262 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 ZNF551Q7Z340 670 aaPredicted RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 C10orf111Q8N326 155 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 TTC29Q8NA56 475 aaPredicted RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 BHLHE22Q8NFJ8 381 aaPredicted RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 PSMA8Q8TAA3 256 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 AMDHD1Q96NU7 426 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 CSF3RQ99062 836 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 PIF1Q9H611 641 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 RPF2Q9H7B2 306 aaKnown RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 CLK4Q9HAZ1 481 aaKnown RBP17.39■□□□□ 0.37
CLN3-254ENST00000637050 NEUROD4Q9HD90 331 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 PSME2Q9UL46 239 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 SPACA6W5XKT8 324 aa17.39■□□□□ 0.37
CLN3-254ENST00000637050 UNC13CQ8NB66 2214 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 ERAL1O75616 437 aaKnown RBP17.38■□□□□ 0.37
CLN3-254ENST00000637050 PSMG1O95456 288 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 ACP1P24666 158 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 NTSP30990 170 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 GCGRP47871 477 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 ERFP50548 548 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 RAB38P57729 211 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 ABHD18Q0P651 414 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 TCF15Q12870 199 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 DHFR2Q86XF0 187 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 DTWD1Q8N5C7 304 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 HIPK4Q8NE63 616 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 OR2T12Q8NG77 320 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 OR1L3Q8NH93 324 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 RHBDD1Q8TEB9 315 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 STMN2Q93045 179 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 FAM120BQ96EK7 910 aaKnown RBP17.38■□□□□ 0.37
CLN3-254ENST00000637050 ZNF681Q96N22 645 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 BBS4Q96RK4 519 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 SLC35A5Q9BS91 424 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 GLIPR2Q9H4G4 154 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 CXorf36Q9H7Y0 433 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 ACTR3BQ9P1U1 418 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 EGFL7Q9UHF1 273 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 CORO2BQ9UQ03 480 aa17.38■□□□□ 0.37
CLN3-254ENST00000637050 FAM220BPB1ANY3 271 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 KRT36O76013 467 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms