RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 SGK494L7N484 410 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 DNAJA2O60884 412 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 ATP6V1G2O95670 118 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 NR2F6P10588 404 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 ERFP50548 548 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 DAB2P98082 770 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 DUSP2Q05923 314 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 TRAP1Q12931 704 aaKnown RBP13.47□□□□□ -0.25
USP39-220ENST00000613444 CEBPEQ15744 281 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 GPR19Q15760 415 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 C6orf163Q5TEZ5 329 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 GARNL3Q5VVW2 1013 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 CALHM3Q86XJ0 350 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 CLEC4FQ8N1N0 589 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 CA13Q8N1Q1 262 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 CNRIP1Q96F85 164 aaPredicted RBP13.47□□□□□ -0.25
USP39-220ENST00000613444 ZNF681Q96N22 645 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 SH3GL1Q99961 368 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 THUMPD3Q9BV44 507 aaKnown RBP13.47□□□□□ -0.25
USP39-220ENST00000613444 NPLQ9BXD5 320 aaPredicted RBP13.47□□□□□ -0.25
USP39-220ENST00000613444 RXFP3Q9NSD7 469 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 ACSS1Q9NUB1 689 aaPredicted RBP13.47□□□□□ -0.25
USP39-220ENST00000613444 TAS2R9Q9NYW1 312 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 IGHV5-10-1A0A0J9YXX1 117 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 CLIC1O00299 241 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 CYR61O00622 381 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 NTN3O00634 580 aaPredicted RBP13.47□□□□□ -0.25
USP39-220ENST00000613444 GPX2P18283 190 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 HTR1EP28566 365 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 DUSP3P51452 185 aaPredicted RBP13.47□□□□□ -0.25
USP39-220ENST00000613444 EMP3P54852 163 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 OR4D2P58180 307 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 FLOT2Q14254 428 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 MLC1Q15049 377 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 IFNEQ86WN2 208 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 PRSS33Q8NF86 280 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 OR10A6Q8NH74 314 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 PSMA8Q8TAA3 256 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 SUN3Q8TAQ9 357 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 OR5P2Q8WZ92 322 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 PIF1Q9H611 641 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 CXorf36Q9H7Y0 433 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 TPT1P8Q9HAU6 139 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 ANKHQ9HCJ1 492 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 PRDM9Q9NQV7 894 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 SIRT3Q9NTG7 399 aaPredicted RBP13.47□□□□□ -0.25
USP39-220ENST00000613444 GPATCH2Q9NW75 528 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 MS4A12Q9NXJ0 267 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 ZNF282Q9UDV7 671 aaPredicted RBP13.47□□□□□ -0.25
USP39-220ENST00000613444 VPS4AQ9UN37 437 aa13.47□□□□□ -0.25
USP39-220ENST00000613444 A0A0A6YYC8 382 aaPredicted RBP13.46□□□□□ -0.25
USP39-220ENST00000613444 MYO1GB0I1T2 1018 aa13.46□□□□□ -0.25
USP39-220ENST00000613444 TMEM150CB9EJG8 249 aa13.46□□□□□ -0.25
USP39-220ENST00000613444 I3L1I5 382 aaPredicted RBP13.46□□□□□ -0.25
USP39-220ENST00000613444 FLRT2O43155 660 aa13.46□□□□□ -0.25
USP39-220ENST00000613444 RDH16O75452 317 aa13.46□□□□□ -0.25
USP39-220ENST00000613444 ABCB1P08183 1280 aaPredicted RBP13.46□□□□□ -0.25
USP39-220ENST00000613444 CD59P13987 128 aa13.46□□□□□ -0.25
USP39-220ENST00000613444 DDX5P17844 614 aaKnown RBP13.46□□□□□ -0.25
USP39-220ENST00000613444 CPN2P22792 545 aa13.46□□□□□ -0.25
USP39-220ENST00000613444 MVDP53602 400 aa13.46□□□□□ -0.25
USP39-220ENST00000613444 ZNF750Q32MQ0 723 aa13.46□□□□□ -0.25
USP39-220ENST00000613444 PRR23CQ6ZRP0 262 aa13.46□□□□□ -0.25
USP39-220ENST00000613444 TMEM52Q8NDY8 209 aa13.46□□□□□ -0.25
USP39-220ENST00000613444 OR1L3Q8NH93 324 aa13.46□□□□□ -0.25
USP39-220ENST00000613444 ZBED6CLQ96FA7 236 aaPredicted RBP13.46□□□□□ -0.25
USP39-220ENST00000613444 CNDP2Q96KP4 475 aaKnown RBP13.46□□□□□ -0.25
USP39-220ENST00000613444 AMDHD1Q96NU7 426 aa13.46□□□□□ -0.25
USP39-220ENST00000613444 KCTD14Q9BQ13 255 aaPredicted RBP13.46□□□□□ -0.25
USP39-220ENST00000613444 ECSITQ9BQ95 431 aa13.46□□□□□ -0.25
USP39-220ENST00000613444 GLIPR2Q9H4G4 154 aa13.46□□□□□ -0.25
USP39-220ENST00000613444 EGFL7Q9UHF1 273 aa13.46□□□□□ -0.25
USP39-220ENST00000613444 KRT36O76013 467 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 NSA2O95478 260 aaKnown RBP13.45□□□□□ -0.26
USP39-220ENST00000613444 CKMT2P17540 419 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 ACP1P24666 158 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 BUD31P41223 144 aaPredicted RBP13.45□□□□□ -0.26
USP39-220ENST00000613444 ARL4DP49703 201 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 BNIP2Q12982 314 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 GRM7Q14831 915 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 NDUFA9Q16795 377 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 BHLHE22Q8NFJ8 381 aaPredicted RBP13.45□□□□□ -0.26
USP39-220ENST00000613444 ZNF501Q96CX3 271 aaPredicted RBP13.45□□□□□ -0.26
USP39-220ENST00000613444 DPYSL5Q9BPU6 564 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 EPS8L2Q9H6S3 715 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 PCDHGB4Q9UN71 923 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 AP3M1Q9Y2T2 418 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 TMEM184BQ9Y519 407 aaPredicted RBP13.45□□□□□ -0.26
USP39-220ENST00000613444 PCDHB3Q9Y5E6 796 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 NVLO15381 856 aaKnown RBP13.45□□□□□ -0.26
USP39-220ENST00000613444 ERAL1O75616 437 aaKnown RBP13.45□□□□□ -0.26
USP39-220ENST00000613444 OR2B3O76000 313 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 LDOC1O95751 146 aaPredicted RBP13.45□□□□□ -0.26
USP39-220ENST00000613444 ATP6V1B2P21281 511 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 MANFP55145 182 aaKnown RBP13.45□□□□□ -0.26
USP39-220ENST00000613444 CLPPQ16740 277 aaPredicted RBP13.45□□□□□ -0.26
USP39-220ENST00000613444 SLITRK4Q8IW52 837 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 RCBTB1Q8NDN9 531 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 HIPK4Q8NE63 616 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 JADE3Q92613 823 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms