RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	TBC1D19	Q8N5T2	526 aa		11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	C1orf52	Q8N6N3	182 aa	Known RBP	11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	OR9I1	Q8NGQ6	314 aa		11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	OR2Y1	Q8NGV0	311 aa		11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	CREB3L4	Q8TEY5	395 aa		11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	TM9SF4	Q92544	642 aa		11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	GBP5	Q96PP8	586 aa		11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	F2RL3	Q96RI0	385 aa		11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	SERPINI1	Q99574	410 aa		11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	MACROD1	Q9BQ69	325 aa		11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	SARG	Q9BW04	601 aa		11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	FAM60A	Q9NP50	221 aa		11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	ASF1B	Q9NVP2	202 aa		11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	NOP53	Q9NZM5	478 aa	Known RBP	11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	NDOR1	Q9UHB4	597 aa		11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	ADGRE2	Q9UHX3	823 aa		11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	ERRFI1	Q9UJM3	462 aa	Predicted RBP	11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	DLGAP4	Q9Y2H0	992 aa		11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	PTRH2	Q9Y3E5	179 aa	Known RBP	11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	KLK4	Q9Y5K2	254 aa		11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	GPR45	Q9Y5Y3	372 aa		11.97	□□□□□ -0.49
UPF1-208	ENST00000600012	SCN2A	Q99250	2005 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	WIPF3	A6NGB9	483 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012		C9JVG2	144 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012		H3BMH7	237 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	ZSCAN9	O15535	394 aa	Predicted RBP	11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	NDUFS4	O43181	175 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	CLEC3A	O75596	197 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	LDLR	P01130	860 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	G6PD	P11413	515 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	IDO1	P14902	403 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	GPX3	P22352	226 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	CPA2	P48052	419 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	GABRA4	P48169	554 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	RAE1	P78406	368 aa	Known RBP	11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	ACSM2A	Q08AH3	577 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	MAD2L1	Q13257	205 aa	Predicted RBP	11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	NAA25	Q14CX7	972 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	RPS6KA2	Q15349	733 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	GSTA3	Q16772	222 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	SMU1	Q2TAY7	513 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	DEFB110	Q30KQ9	67 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	AGK	Q53H12	422 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	TOR1AIP1	Q5JTV8	583 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	C1orf189	Q5VU69	101 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	KHDRBS2	Q5VWX1	349 aa	Known RBP	11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	ACSM2B	Q68CK6	577 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	FRMPD2B	Q6IN97	320 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	FBXO42	Q6P3S6	717 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	TLDC1	Q6P9B6	456 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	CYP20A1	Q6UW02	462 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	VN1R4	Q7Z5H5	301 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	MIER2	Q8N344	545 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	CISD2	Q8N5K1	135 aa	Known RBP	11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	POU5F2	Q8N7G0	328 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	TTL	Q8NG68	377 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	CLHC1	Q8NHS4	586 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	ZUFSP	Q96AP4	578 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	FCRL1	Q96LA6	429 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	SORBS1	Q9BX66	1292 aa	Known RBP	11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	BRINP2	Q9C0B6	783 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	AICDA	Q9GZX7	198 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	TXLNG	Q9NUQ3	528 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	P4HTM	Q9NXG6	502 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	IFT80	Q9P2H3	777 aa	Predicted RBP	11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	PPT2	Q9UMR5	302 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	EIF3L	Q9Y262	564 aa	Known RBP	11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	SLC5A6	Q9Y289	635 aa		11.96	□□□□□ -0.49
UPF1-208	ENST00000600012	ITPR2	Q14571	2701 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012		A0A0G2JN53	185 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	C4orf51	C9J302	202 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	PSMD12	O00232	456 aa	Predicted RBP	11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	RTCA	O00442	366 aa	Known RBP	11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	PLPP1	O14494	284 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	P2RX6	O15547	441 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	HCRTR1	O43613	425 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	BCKDHA	P12694	445 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	SDC1	P18827	310 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	TACR1	P25103	407 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	PTX3	P26022	381 aa	Predicted RBP	11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	MAPK1	P28482	360 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	TIA1	P31483	386 aa	Known RBP eCLIP	11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	HNRNPH1	P31943	449 aa	Known RBP	11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	AHR	P35869	848 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	RAP1GDS1	P52306	607 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	SOX8	P57073	446 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	UFM1	P61960	85 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	HYAL2	Q12891	473 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	CUL3	Q13618	768 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	ELOA	Q14241	798 aa	Known RBP	11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	PTGR1	Q14914	329 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	KRT72	Q14CN4	511 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	PDCD4	Q53EL6	469 aa	Known RBP	11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	SPIN4	Q56A73	249 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	DEPDC1	Q5TB30	811 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	NOXRED1	Q6NXP6	359 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	COMMD6	Q7Z4G1	85 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	ASPG	Q86U10	573 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	METTL4	Q8N3J2	472 aa		11.95	□□□□□ -0.5
UPF1-208	ENST00000600012	ZADH2	Q8N4Q0	377 aa		11.95	□□□□□ -0.5

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