RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PET100P0DJ07 73 aa19.64■□□□□ 0.74
UPF1-207ENST00000599848 SH3PXD2AQ5TCZ1 1133 aa19.64■□□□□ 0.74
UPF1-207ENST00000599848 KLHDC10Q6PID8 442 aa19.64■□□□□ 0.74
UPF1-207ENST00000599848 KIAA0907Q7Z7F0 614 aaPredicted RBP19.64■□□□□ 0.74
UPF1-207ENST00000599848 MARCH9Q86YJ5 346 aa19.64■□□□□ 0.74
UPF1-207ENST00000599848 SLC39A11Q8N1S5 342 aa19.64■□□□□ 0.74
UPF1-207ENST00000599848 RPLP0P6Q8NHW5 317 aa19.64■□□□□ 0.74
UPF1-207ENST00000599848 RAB2BQ8WUD1 216 aa19.64■□□□□ 0.74
UPF1-207ENST00000599848 DPPA5A6NC42 116 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 SOBPA7XYQ1 873 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 NOBOXO60393 691 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 HOXD8P13378 290 aaPredicted RBP19.64■□□□□ 0.73
UPF1-207ENST00000599848 S100A1P23297 94 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 NAPRTQ6XQN6 538 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 C14orf80Q86SX3 495 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 OR6N2Q8NGY6 317 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 DNTTIP1Q9H147 329 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 STOX2Q9P2F5 926 aaPredicted RBP19.64■□□□□ 0.73
UPF1-207ENST00000599848 PTHP01270 115 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 ZNF16P17020 682 aaPredicted RBP19.64■□□□□ 0.73
UPF1-207ENST00000599848 GRIA1P42261 906 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 NXPE4Q6UWF7 544 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 IQCKQ8N0W5 287 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 HAVCR2Q8TDQ0 301 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 TSACCQ96A04 125 aaPredicted RBP19.64■□□□□ 0.73
UPF1-207ENST00000599848 SIX2Q9NPC8 291 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 PLOD2O00469 737 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 CPNE6O95741 557 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 SPARCP09486 303 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 GDF10P55107 478 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 KCNJ11Q14654 390 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 MANEAQ5SRI9 462 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 SHKBP1Q8TBC3 707 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 SEC14L1Q92503 715 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 PYURFQ96I23 114 aa19.64■□□□□ 0.73
UPF1-207ENST00000599848 KANTRA0A1W2PQU2 76 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 TFECO14948 347 aaPredicted RBP19.63■□□□□ 0.73
UPF1-207ENST00000599848 VIPR2P41587 438 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 CSNK2A1P68400 391 aaPredicted RBP19.63■□□□□ 0.73
UPF1-207ENST00000599848 UGT3A2Q3SY77 523 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 TIGD4Q8IY51 512 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 SERINC2Q96SA4 455 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 TM9SF3Q9HD45 589 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 COL2A1P02458 1487 aaPredicted RBP19.63■□□□□ 0.73
UPF1-207ENST00000599848 CD9P21926 228 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 WDR5P61964 334 aaKnown RBP19.63■□□□□ 0.73
UPF1-207ENST00000599848 E2F1Q01094 437 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 LARP4Q71RC2 724 aaKnown RBP eCLIP19.63■□□□□ 0.73
UPF1-207ENST00000599848 S100A7AQ86SG5 101 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 TRIM74Q86UV6 250 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 NCK1P16333 377 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 CST5P28325 142 aaPredicted RBP19.63■□□□□ 0.73
UPF1-207ENST00000599848 TLDC1Q6P9B6 456 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 TRMT10BQ6PF06 316 aaKnown RBP19.63■□□□□ 0.73
UPF1-207ENST00000599848 BORAQ6PGQ7 559 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 SMG8Q8ND04 991 aaKnown RBP19.63■□□□□ 0.73
UPF1-207ENST00000599848 AGBL5Q8NDL9 886 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 RHEBL1Q8TAI7 183 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 THAP6Q8TBB0 222 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 FAM86C1Q9NVL1 165 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 A0A0J9YY10 115 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 VWA5B1Q5TIE3 1220 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 LRCH3Q96II8 777 aa19.63■□□□□ 0.73
UPF1-207ENST00000599848 A0A1W2PP18 115 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 OR2AT4A6NND4 320 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 H3BQ06 376 aaPredicted RBP19.62■□□□□ 0.73
UPF1-207ENST00000599848 J3QLW9 94 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 FAAHO00519 579 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 RFPL2O75678 378 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 ADORA3P0DMS8 318 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 ZNF19P17023 458 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 CFL1P23528 166 aaKnown RBP19.62■□□□□ 0.73
UPF1-207ENST00000599848 APLNRP35414 380 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 SLC18A1P54219 525 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 BTBD16Q32M84 506 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 LRRN1Q6UXK5 716 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 TIFABQ6ZNK6 161 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 UEVLDQ8IX04 471 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 THAP4Q8WY91 577 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 BOKQ9UMX3 212 aaPredicted RBP19.62■□□□□ 0.73
UPF1-207ENST00000599848 A0A0G2JMP0 313 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 CLDN25C9JDP6 229 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 ITGB7P26010 798 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 KCTD21Q4G0X4 260 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 ARHGAP11AQ6P4F7 1023 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 UBQLNLQ8IYU4 475 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 OR4M2Q8NGB6 313 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 ASB9Q96DX5 294 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 GAL3ST1Q99999 423 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 KCNN3Q9UGI6 736 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 ZNF221Q9UK13 617 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 TCRBV7S2A1N4TA0A589 114 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 TTC24A2A3L6 582 aaPredicted RBP19.62■□□□□ 0.73
UPF1-207ENST00000599848 RBMXP38159 391 aaKnown RBP19.62■□□□□ 0.73
UPF1-207ENST00000599848 MPP7Q5T2T1 576 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 EHD1Q9H4M9 534 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 SLC39A1Q9NY26 324 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 A0A0D9SEW6 157 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 ZNF860A6NHJ4 632 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 TMEM189-UBE2V1I3L0A0 370 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms