RNA–Protein interactions for RNA: ENST00000581708.5

CDK5RAP3-222, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 543 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-222	ENST00000581708	SIX3	O95343	332 aa	Predicted RBP	11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	OTC	P00480	354 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	IFNA16	P05015	189 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	GSTA1	P08263	222 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	RPS17	P08708	135 aa	Known RBP	11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	TAC1	P20366	129 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	GALNS	P34059	522 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	DDX39B	Q13838	428 aa	Known RBP	11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	ZRSR2	Q15696	482 aa	Known RBP	11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	CPSF6	Q16630	551 aa	Known RBP eCLIP	11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	FRG2	Q64ET8	278 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	SPINK14	Q6IE38	97 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	MRM1	Q6IN84	353 aa	Known RBP	11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	GFRAL	Q6UXV0	394 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	HSDL2	Q6YN16	418 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	BNC2	Q6ZN30	1099 aa	Predicted RBP	11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	NUDT13	Q86X67	352 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	TMEM156	Q8N614	296 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	PTPMT1	Q8WUK0	201 aa	Predicted RBP	11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	NCLN	Q969V3	563 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	PHF21B	Q96EK2	531 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	ART5	Q96L15	291 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	FRG2B	Q96QU4	278 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	CSF3R	Q99062	836 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	RPF2	Q9H7B2	306 aa	Known RBP	11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	NOL11	Q9H8H0	719 aa	Known RBP	11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	WDR41	Q9HAD4	459 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	COPS7A	Q9UBW8	275 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	ADAM29	Q9UKF5	820 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	OSGIN2	Q9Y236	505 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	STK38L	Q9Y2H1	464 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	KLF13	Q9Y2Y9	288 aa	Predicted RBP	11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	RNF11	Q9Y3C5	154 aa		11.73	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708		A0A0A6YYD5	115 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	RTCA	O00442	366 aa	Known RBP	11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	PROM1	O43490	865 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	MAN1A2	O60476	641 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	ITGA10	O75578	1167 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	TNNI3	P19429	210 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	STT3A	P46977	705 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	SSR4	P51571	173 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	CASP6	P55212	293 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	NAA20	P61599	178 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	RPS13	P62277	151 aa	Known RBP	11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	PLIN5	Q00G26	463 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	TNFRSF17	Q02223	184 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	ALDH6A1	Q02252	535 aa	Known RBP	11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	IFT88	Q13099	833 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	CYP20A1	Q6UW02	462 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	PAGE2	Q7Z2X7	111 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	MAMDC2	Q7Z304	686 aa	Predicted RBP	11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	GALNTL5	Q7Z4T8	443 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	CLNK	Q7Z7G1	428 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	TMEM151A	Q8N4L1	468 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	AMER2	Q8N7J2	671 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	TRPC4AP	Q8TEL6	797 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	ZNF483	Q8TF39	744 aa	Predicted RBP	11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	ANKRD9	Q96BM1	317 aa	Predicted RBP	11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	RBM18	Q96H35	190 aa	Known RBP	11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	GPR137	Q96N19	417 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	FRMD6	Q96NE9	622 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	ZNF717	Q9BY31	904 aa	Predicted RBP	11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	L2HGDH	Q9H9P8	463 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	KLHL1	Q9NR64	748 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	ZNF358	Q9NW07	568 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	NMRK1	Q9NWW6	199 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	ANKRD10	Q9NXR5	420 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	MYOT	Q9UBF9	498 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	ZNF223	Q9UK11	482 aa	Predicted RBP	11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	FBXW2	Q9UKT8	454 aa		11.72	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	LRRC14B	A6NHZ5	514 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	C17orf105	B2RV13	164 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	SAP18	O00422	153 aa	Known RBP	11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	LRRTM2	O43300	516 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	GUCY1B2	O75343	617 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	UNC5C	O95185	931 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	GPR75	O95800	540 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	RHOXF2B	P0C7M4	288 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	FAM58BP	P0C7Q3	252 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	MST1	P26927	711 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	GCA	P28676	217 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	TNFRSF8	P28908	595 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	BSG	P35613	385 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	ARL1	P40616	181 aa	Predicted RBP	11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	HERVK_113	P63132	956 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	TBL3	Q12788	808 aa	Known RBP	11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	TRAF3	Q13114	568 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	SLC29A2	Q14542	456 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	RASA2	Q15283	850 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	MAPKAPK3	Q16644	382 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	MPEG1	Q2M385	716 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	ZNF468	Q5VIY5	522 aa	Predicted RBP	11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	TTC19	Q6DKK2	380 aa	Predicted RBP	11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	MILR1	Q7Z6M3	343 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	SLC22A9	Q8IVM8	553 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	ST13P4	Q8IZP2	240 aa	Predicted RBP	11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	CYP4Z2P	Q8N1L4	340 aa		11.71	□□□□□ -0.53
CDK5RAP3-222	ENST00000581708	OR52B6	Q8NGF0	335 aa		11.71	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms