RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 DHDDSQ86SQ9 333 aa23.68■■□□□ 1.38
SHMT1-207ENST00000580002 MARCH9Q86YJ5 346 aa23.68■■□□□ 1.38
SHMT1-207ENST00000580002 TMEM151BQ8IW70 566 aa23.68■■□□□ 1.38
SHMT1-207ENST00000580002 MTERF3Q96E29 417 aa23.68■■□□□ 1.38
SHMT1-207ENST00000580002 CNRIP1Q96F85 164 aaPredicted RBP23.68■■□□□ 1.38
SHMT1-207ENST00000580002 AURKBQ96GD4 344 aaPredicted RBP23.68■■□□□ 1.38
SHMT1-207ENST00000580002 GPATCH1Q9BRR8 931 aaKnown RBP23.68■■□□□ 1.38
SHMT1-207ENST00000580002 THTPAQ9BU02 230 aa23.68■■□□□ 1.38
SHMT1-207ENST00000580002 BHLHE41Q9C0J9 482 aaPredicted RBP23.68■■□□□ 1.38
SHMT1-207ENST00000580002 CROTQ9UKG9 612 aa23.68■■□□□ 1.38
SHMT1-207ENST00000580002 CLCA2Q9UQC9 943 aa23.68■■□□□ 1.38
SHMT1-207ENST00000580002 PRSS51A0A1B0GVH4 220 aa23.67■■□□□ 1.38
SHMT1-207ENST00000580002 A0A1W2PNU3 283 aaPredicted RBP23.67■■□□□ 1.38
SHMT1-207ENST00000580002 C1orf226A1L170 272 aa23.67■■□□□ 1.38
SHMT1-207ENST00000580002 DYTNA2CJ06 578 aa23.67■■□□□ 1.38
SHMT1-207ENST00000580002 HNRNPCL1O60812 293 aaKnown RBP23.67■■□□□ 1.38
SHMT1-207ENST00000580002 ABCB1P08183 1280 aaPredicted RBP23.67■■□□□ 1.38
SHMT1-207ENST00000580002 PCSK2P16519 638 aa23.67■■□□□ 1.38
SHMT1-207ENST00000580002 FEN1P39748 380 aaKnown RBP23.67■■□□□ 1.38
SHMT1-207ENST00000580002 ETV5P41161 510 aa23.67■■□□□ 1.38
SHMT1-207ENST00000580002 RASSF2P50749 326 aa23.67■■□□□ 1.38
SHMT1-207ENST00000580002 E2F1Q01094 437 aa23.67■■□□□ 1.38
SHMT1-207ENST00000580002 ACTN3Q08043 901 aaPredicted RBP23.67■■□□□ 1.38
SHMT1-207ENST00000580002 ILKQ13418 452 aa23.67■■□□□ 1.38
SHMT1-207ENST00000580002 DPY19L1Q2PZI1 675 aa23.67■■□□□ 1.38
SHMT1-207ENST00000580002 COQ5Q5HYK3 327 aa23.67■■□□□ 1.38
SHMT1-207ENST00000580002 ZNF551Q7Z340 670 aaPredicted RBP23.67■■□□□ 1.38
SHMT1-207ENST00000580002 RNF148Q8N7C7 305 aa23.67■■□□□ 1.38
SHMT1-207ENST00000580002 PCYOX1LQ8NBM8 494 aa23.67■■□□□ 1.38
SHMT1-207ENST00000580002 STARD8Q92502 1023 aa23.67■■□□□ 1.38
SHMT1-207ENST00000580002 TRIM4Q9C037 500 aa23.67■■□□□ 1.38
SHMT1-207ENST00000580002 RPF2Q9H7B2 306 aaKnown RBP23.67■■□□□ 1.38
SHMT1-207ENST00000580002 PCDHB14Q9Y5E9 798 aa23.67■■□□□ 1.38
SHMT1-207ENST00000580002 TBX19O60806 448 aa23.66■■□□□ 1.38
SHMT1-207ENST00000580002 LDB3O75112 727 aa23.66■■□□□ 1.38
SHMT1-207ENST00000580002 CDC123O75794 336 aaPredicted RBP23.66■■□□□ 1.38
SHMT1-207ENST00000580002 MT-CO3P00414 261 aa23.66■■□□□ 1.38
SHMT1-207ENST00000580002 ZNF28P17035 718 aa23.66■■□□□ 1.38
SHMT1-207ENST00000580002 HOXB9P17482 250 aaPredicted RBP23.66■■□□□ 1.38
SHMT1-207ENST00000580002 CCKBRP32239 447 aa23.66■■□□□ 1.38
SHMT1-207ENST00000580002 EMP3P54852 163 aa23.66■■□□□ 1.38
SHMT1-207ENST00000580002 PCBP4P57723 403 aaKnown RBP23.66■■□□□ 1.38
SHMT1-207ENST00000580002 FOXL2P58012 376 aa23.66■■□□□ 1.38
SHMT1-207ENST00000580002 ISXQ2M1V0 245 aa23.66■■□□□ 1.38
SHMT1-207ENST00000580002 RABL3Q5HYI8 236 aa23.66■■□□□ 1.38
SHMT1-207ENST00000580002 DOK4Q8TEW6 326 aa23.66■■□□□ 1.38
SHMT1-207ENST00000580002 CDRT15Q96T59 188 aa23.66■■□□□ 1.38
SHMT1-207ENST00000580002 SLC35C2Q9NQQ7 365 aa23.66■■□□□ 1.38
SHMT1-207ENST00000580002 FAM120CQ9NX05 1096 aaKnown RBP23.66■■□□□ 1.38
SHMT1-207ENST00000580002 PHF11Q9UIL8 331 aa23.66■■□□□ 1.38
SHMT1-207ENST00000580002 MAN2B2Q9Y2E5 1009 aa23.66■■□□□ 1.38
SHMT1-207ENST00000580002 FER1L5A0AVI2 2057 aa23.66■■□□□ 1.38
SHMT1-207ENST00000580002 GUCY1B2O75343 617 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 GSTM5P46439 218 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 AVPR1BP47901 424 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 RAB38P57729 211 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 HBA1P69905 142 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 TRMT5Q32P41 509 aaKnown RBP23.65■■□□□ 1.38
SHMT1-207ENST00000580002 GLRX5Q86SX6 157 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 TMEM126BQ8IUX1 230 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 PGAM4Q8N0Y7 254 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 OR51Q1Q8NH59 317 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 ITCHQ96J02 903 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 NPLQ9BXD5 320 aaPredicted RBP23.65■■□□□ 1.38
SHMT1-207ENST00000580002 IKZF5Q9H5V7 419 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 ACTR5Q9H9F9 607 aaPredicted RBP23.65■■□□□ 1.38
SHMT1-207ENST00000580002 SLC22A11Q9NSA0 550 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 TAS2R7Q9NYW3 318 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 CFAP54Q96N23 3096 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 A0A1W2PRB8 838 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 RFXANKO14593 260 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 CSO75390 466 aaKnown RBP23.65■■□□□ 1.38
SHMT1-207ENST00000580002 SCRG1O75711 98 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 PDE5AO76074 875 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 SLC6A2P23975 617 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 MSX2P35548 267 aaPredicted RBP23.65■■□□□ 1.38
SHMT1-207ENST00000580002 RPL3P39023 403 aaKnown RBP23.65■■□□□ 1.38
SHMT1-207ENST00000580002 BUD31P41223 144 aaPredicted RBP23.65■■□□□ 1.38
SHMT1-207ENST00000580002 HES3Q5TGS1 186 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 NANOGP8Q6NSW7 305 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 HACD2Q6Y1H2 254 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 PPP1R3BQ86XI6 285 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 ROPN1LQ96C74 230 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 CCDC115Q96NT0 180 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 PANX1Q96RD7 426 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 CGREF1Q99674 301 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 YIPF2Q9BWQ6 316 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 TMEM121BQ9BXQ6 578 aaPredicted RBP23.65■■□□□ 1.38
SHMT1-207ENST00000580002 AKIRIN1Q9H9L7 192 aaPredicted RBP23.65■■□□□ 1.38
SHMT1-207ENST00000580002 NANOGQ9H9S0 305 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 ATAD3AQ9NVI7 634 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 CMTM6Q9NX76 183 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 MAPRE3Q9UPY8 281 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 PCDHGA1Q9Y5H4 931 aa23.65■■□□□ 1.38
SHMT1-207ENST00000580002 RNASET2O00584 256 aaKnown RBP23.64■■□□□ 1.37
SHMT1-207ENST00000580002 TM4SF5O14894 197 aa23.64■■□□□ 1.37
SHMT1-207ENST00000580002 DSCR3O14972 297 aa23.64■■□□□ 1.37
SHMT1-207ENST00000580002 PDPK1O15530 556 aa23.64■■□□□ 1.37
SHMT1-207ENST00000580002 FGF17O60258 216 aa23.64■■□□□ 1.37
SHMT1-207ENST00000580002 FOXD2O60548 495 aaPredicted RBP23.64■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms