RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 SLC38A5Q8WUX1 472 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 PPP1R14BQ96C90 147 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 QRFPRQ96P65 431 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 SFXN1Q9H9B4 322 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 NEUROD4Q9HD90 331 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 A4GALTQ9NPC4 353 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 FKBP14Q9NWM8 211 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 ACSL5Q9ULC5 683 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 B3GNT3Q9Y2A9 372 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 HCN4Q9Y3Q4 1203 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 FAM32AQ9Y421 112 aaKnown RBP9.59□□□□□ -0.87
VPS53-220ENST00000576149 CLCA1A8K7I4 914 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 GPR89AB7ZAQ6 455 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 M0R3G1 203 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 GADD45GO95257 159 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 IFNW1P05000 195 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 GPR89BP0CG08 455 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 DDX5P17844 614 aaKnown RBP9.58□□□□□ -0.88
VPS53-220ENST00000576149 GABRB1P18505 474 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 FUT4P22083 530 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 TRIM23P36406 574 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 TGFBR2P37173 567 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 ALDH9A1P49189 494 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 VBP1P61758 197 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 LSM3P62310 102 aaKnown RBP9.58□□□□□ -0.88
VPS53-220ENST00000576149 KCNC4Q03721 635 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 DMPKQ09013 629 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 PUM1Q14671 1186 aaKnown RBP eCLIP9.58□□□□□ -0.88
VPS53-220ENST00000576149 NR1D2Q14995 579 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 CST6Q15828 149 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 DUSP6Q16828 381 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 SLCO6A1Q86UG4 719 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 NUDT13Q86X67 352 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 CACUL1Q86Y37 369 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 DEPDC4Q8N2C3 294 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 LINC01555Q8NAE3 123 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 DENND6BQ8NEG7 585 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 APOBEC4Q8WW27 367 aaKnown RBP9.58□□□□□ -0.88
VPS53-220ENST00000576149 FCGR1BQ92637 280 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 RGMAQ96B86 450 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 CHFRQ96EP1 664 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 ZNF764Q96H86 408 aaPredicted RBP9.58□□□□□ -0.88
VPS53-220ENST00000576149 TMEM106CQ9BVX2 250 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 ZNF556Q9HAH1 456 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 SIRT3Q9NTG7 399 aaPredicted RBP9.58□□□□□ -0.88
VPS53-220ENST00000576149 ZNF226Q9NYT6 803 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 ADAM29Q9UKF5 820 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 WDR37Q9Y2I8 494 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 OR1A2Q9Y585 309 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 ARRDC5A6NEK1 342 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 CLDN24A6NM45 220 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 GRXCR1A8MXD5 290 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 CLDN25C9JDP6 229 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 NDUFS4O43181 175 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 OR1F1O43749 312 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 TMPRSS11DO60235 418 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 B4GALT2O60909 372 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 CCNB2O95067 398 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 FUCA1P04066 466 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 CDK1P06493 297 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 CA3P07451 260 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 CBLP22681 906 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 C21orf33P30042 268 aaPredicted RBP9.58□□□□□ -0.88
VPS53-220ENST00000576149 GSTM5P46439 218 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 IDH2P48735 452 aaKnown RBP9.58□□□□□ -0.88
VPS53-220ENST00000576149 RPS26P62854 115 aaKnown RBP9.58□□□□□ -0.88
VPS53-220ENST00000576149 CSNK1G2P78368 415 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 GANABQ14697 944 aaKnown RBP9.58□□□□□ -0.88
VPS53-220ENST00000576149 ZNF846Q147U1 533 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 C6orf120Q7Z4R8 191 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 UBE3DQ7Z6J8 389 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 DYNC2LI1Q8TCX1 351 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 PHF10Q8WUB8 498 aaKnown RBP9.58□□□□□ -0.88
VPS53-220ENST00000576149 GGHQ92820 318 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 MYDGFQ969H8 173 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 ITPAQ9BY32 194 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 WDR26Q9H7D7 661 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 RHBDL2Q9NX52 303 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 C5AR2Q9P296 337 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 SERGEFQ9UGK8 458 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 KCND3Q9UK17 655 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 ERGIC3Q9Y282 383 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 STON1Q9Y6Q2 735 aa9.58□□□□□ -0.88
VPS53-220ENST00000576149 C5orf58C9J3I9 102 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 LCMT2O60294 686 aaKnown RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 MFN2O95140 757 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 BCHEP06276 602 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 CD36P16671 472 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 TEAD1P28347 426 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 ALDH4A1P30038 563 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 IDUAP35475 653 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 SLC19A1P41440 591 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 WASP42768 502 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 NCS1P62166 190 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 HSPB3Q12988 150 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 MLF2Q15773 248 aaPredicted RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 TBCEQ15813 527 aaPredicted RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 DGUOKQ16854 277 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 RPS26P11Q5JNZ5 115 aaPredicted RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 KIAA1161Q6NSJ0 714 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms