RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ZNF595Q8IYB9 648 aa16.49■□□□□ 0.23
CLK3-227ENST00000570296 SLC15A4Q8N697 577 aa16.49■□□□□ 0.23
CLK3-227ENST00000570296 ZNF321PQ8N8H1 164 aa16.49■□□□□ 0.23
CLK3-227ENST00000570296 UCN3Q969E3 161 aa16.49■□□□□ 0.23
CLK3-227ENST00000570296 INTS12Q96CB8 462 aaKnown RBP16.49■□□□□ 0.23
CLK3-227ENST00000570296 NPLQ9BXD5 320 aaPredicted RBP16.49■□□□□ 0.23
CLK3-227ENST00000570296 ZNHIT6Q9NWK9 470 aaKnown RBP16.49■□□□□ 0.23
CLK3-227ENST00000570296 CRYL1Q9Y2S2 319 aa16.49■□□□□ 0.23
CLK3-227ENST00000570296 SLC6A5Q9Y345 797 aa16.49■□□□□ 0.23
CLK3-227ENST00000570296 TRIM3O75382 744 aaPredicted RBP16.48■□□□□ 0.23
CLK3-227ENST00000570296 CD79BP40259 229 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 SLCO1A2P46721 670 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 HNRNPFP52597 415 aaKnown RBP16.48■□□□□ 0.23
CLK3-227ENST00000570296 ASPHQ12797 758 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 NAE1Q13564 534 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 CUL1Q13616 776 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 DCST1Q5T197 706 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 C11orf63Q6NUN7 778 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 CYHR1Q6ZMK1 362 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 MILR1Q7Z6M3 343 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 ZNF611Q8N823 705 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 TMEM52Q8NDY8 209 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 TRPV3Q8NET8 790 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 GIMAP7Q8NHV1 300 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 NUBPLQ8TB37 319 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 SLC2A12Q8TD20 617 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 SLC44A1Q8WWI5 657 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 WNT2BQ93097 391 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 ABTB1Q969K4 478 aaPredicted RBP16.48■□□□□ 0.23
CLK3-227ENST00000570296 UCN2Q96RP3 112 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 UBQLN3Q9H347 655 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 RYDENQ9NUL5 291 aaKnown RBP16.48■□□□□ 0.23
CLK3-227ENST00000570296 VTI1BQ9UEU0 232 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 CNOT11Q9UKZ1 510 aaKnown RBP16.48■□□□□ 0.23
CLK3-227ENST00000570296 PCDHA13Q9Y5I0 950 aa16.48■□□□□ 0.23
CLK3-227ENST00000570296 C4orf51C9J302 202 aa16.47■□□□□ 0.23
CLK3-227ENST00000570296 ARNTP27540 789 aa16.47■□□□□ 0.23
CLK3-227ENST00000570296 CTNNA1P35221 906 aaKnown RBP16.47■□□□□ 0.23
CLK3-227ENST00000570296 FDFT1P37268 417 aa16.47■□□□□ 0.23
CLK3-227ENST00000570296 RPL21P46778 160 aaKnown RBP16.47■□□□□ 0.23
CLK3-227ENST00000570296 RAB38P57729 211 aa16.47■□□□□ 0.23
CLK3-227ENST00000570296 OCRLQ01968 901 aa16.47■□□□□ 0.23
CLK3-227ENST00000570296 TBCELQ5QJ74 424 aa16.47■□□□□ 0.23
CLK3-227ENST00000570296 BHLHB9Q6PI77 547 aa16.47■□□□□ 0.23
CLK3-227ENST00000570296 SCIMPQ6UWF3 145 aa16.47■□□□□ 0.23
CLK3-227ENST00000570296 LYPD8Q6UX82 237 aa16.47■□□□□ 0.23
CLK3-227ENST00000570296 CLNKQ7Z7G1 428 aa16.47■□□□□ 0.23
CLK3-227ENST00000570296 OR10G3Q8NGC4 313 aa16.47■□□□□ 0.23
CLK3-227ENST00000570296 OR8K1Q8NGG5 319 aa16.47■□□□□ 0.23
CLK3-227ENST00000570296 ALKBH8Q96BT7 664 aaKnown RBP16.47■□□□□ 0.23
CLK3-227ENST00000570296 TRMT61AQ96FX7 289 aaKnown RBP16.47■□□□□ 0.23
CLK3-227ENST00000570296 DNAJC7Q99615 494 aa16.47■□□□□ 0.23
CLK3-227ENST00000570296 KLHL31Q9H511 634 aa16.47■□□□□ 0.23
CLK3-227ENST00000570296 ETNK1Q9HBU6 452 aa16.47■□□□□ 0.23
CLK3-227ENST00000570296 HOMER3Q9NSC5 361 aa16.47■□□□□ 0.23
CLK3-227ENST00000570296 COPS7AQ9UBW8 275 aa16.47■□□□□ 0.23
CLK3-227ENST00000570296 WIF1Q9Y5W5 379 aa16.47■□□□□ 0.23
CLK3-227ENST00000570296 FREM1Q5H8C1 2179 aa16.47■□□□□ 0.23
CLK3-227ENST00000570296 DYSFO75923 2080 aa16.46■□□□□ 0.23
CLK3-227ENST00000570296 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.46■□□□□ 0.23
CLK3-227ENST00000570296 ANKRD33BA6NCL7 494 aa16.46■□□□□ 0.23
CLK3-227ENST00000570296 C17orf105B2RV13 164 aa16.46■□□□□ 0.23
CLK3-227ENST00000570296 TNFSF13O75888 250 aa16.46■□□□□ 0.23
CLK3-227ENST00000570296 ACSL3O95573 720 aa16.46■□□□□ 0.23
CLK3-227ENST00000570296 UGT2B10P36537 528 aa16.46■□□□□ 0.23
CLK3-227ENST00000570296 CETN2P41208 172 aa16.46■□□□□ 0.23
CLK3-227ENST00000570296 RPS4XP62701 263 aaKnown RBP16.46■□□□□ 0.23
CLK3-227ENST00000570296 BTN3A2P78410 334 aa16.46■□□□□ 0.23
CLK3-227ENST00000570296 RUNX2Q13950 521 aa16.46■□□□□ 0.23
CLK3-227ENST00000570296 ZNF704Q6ZNC4 412 aaPredicted RBP16.46■□□□□ 0.23
CLK3-227ENST00000570296 ADGRE4PQ86SQ3 457 aa16.46■□□□□ 0.23
CLK3-227ENST00000570296 FAM13CQ8NE31 585 aa16.46■□□□□ 0.23
CLK3-227ENST00000570296 CCDC42Q96M95 316 aa16.46■□□□□ 0.23
CLK3-227ENST00000570296 QRFPRQ96P65 431 aa16.46■□□□□ 0.23
CLK3-227ENST00000570296 TUBA1CQ9BQE3 449 aa16.46■□□□□ 0.23
CLK3-227ENST00000570296 LMBRD1Q9NUN5 540 aa16.46■□□□□ 0.23
CLK3-227ENST00000570296 LRRC14BA6NHZ5 514 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 E7EVH7 732 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 CTNSO60931 367 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 VAPBO95292 243 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 ACTL6AO96019 429 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 SERPINA6P08185 405 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 FBXO45P0C2W1 286 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 CPN1P15169 458 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 TNNI3P19429 210 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 NMBRP28336 390 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 SERPINB3P29508 390 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 CCKARP32238 428 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 MTTPP55157 894 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 UBASH3AP57075 661 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 IQCB1Q15051 598 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 SH2D5Q6ZV89 423 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 PIWIL4Q7Z3Z4 852 aaKnown RBP16.45■□□□□ 0.22
CLK3-227ENST00000570296 GCNT2Q8N0V5 402 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 FAM47BQ8NA70 645 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 CAVIN3Q969G5 261 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 ANKRD9Q96BM1 317 aaPredicted RBP16.45■□□□□ 0.22
CLK3-227ENST00000570296 SNF8Q96H20 258 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 FAR2Q96K12 515 aa16.45■□□□□ 0.22
CLK3-227ENST00000570296 FAM111AQ96PZ2 611 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms