RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 RORAP35398 523 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 MAN2A2P49641 1150 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 YBX1P67809 324 aaKnown RBP10.39□□□□□ -0.75
CLK3-226ENST00000569406 FKBP1BP68106 108 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 SCAPQ12770 1279 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 IKZF1Q13422 519 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 VPS26BQ4G0F5 336 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 USP39Q53GS9 565 aaKnown RBP10.39□□□□□ -0.75
CLK3-226ENST00000569406 FAM45BPQ6NSW5 357 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 GCNT7Q6ZNI0 430 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 SSX6Q7RTT6 188 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 OR9A2Q8NGT5 310 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 FAM45AQ8TCE6 357 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 STK35Q8TDR2 534 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 LATS2Q9NRM7 1088 aa10.39□□□□□ -0.75
CLK3-226ENST00000569406 BTBD17A6NE02 478 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 TMEM200CA6NKL6 621 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 M0QZ92 97 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 PGK1P00558 417 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 HCKP08631 526 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 ANXA3P12429 323 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 MUC1P15941 1255 aaPredicted RBP10.38□□□□□ -0.75
CLK3-226ENST00000569406 CD72P21854 359 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 LHCGRP22888 699 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 SPAM1P38567 509 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 CCR9P51686 369 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 ZNF691Q5VV52 312 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 RGS7BPQ6MZT1 257 aaPredicted RBP10.38□□□□□ -0.75
CLK3-226ENST00000569406 PLBD1Q6P4A8 553 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 C3P1Q6ZMU1 363 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 FTMTQ8N4E7 242 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 UGT2B28Q9BY64 529 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 SIK2Q9H0K1 926 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 PRDM12Q9H4Q4 367 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 KLHL31Q9H511 634 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 SMPD4Q9NXE4 827 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 MED11Q9P086 117 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 SNX10Q9Y5X0 201 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 A0A096LPI6 279 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 SLC16A6O15403 523 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 HCN1O60741 890 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 ITGB1P05556 798 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 POU3F2P20265 443 aaPredicted RBP10.38□□□□□ -0.75
CLK3-226ENST00000569406 C21orf33P30042 268 aaPredicted RBP10.38□□□□□ -0.75
CLK3-226ENST00000569406 RYKP34925 604 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 PPM1AP35813 382 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 PNPLA4P41247 253 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 PLA2G7Q13093 441 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 RABL3Q5HYI8 236 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 GDF6Q6KF10 455 aaPredicted RBP10.38□□□□□ -0.75
CLK3-226ENST00000569406 KLHDC8BQ8IXV7 354 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 PAPD5Q8NDF8 572 aaKnown RBP10.38□□□□□ -0.75
CLK3-226ENST00000569406 OR2T4Q8NH00 348 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 HMGCLL1Q8TB92 370 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 UBXN10Q96LJ8 280 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 TCEAL7Q9BRU2 100 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 DUSP21Q9H596 190 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 REEP4Q9H6H4 257 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 CSNK1G1Q9HCP0 422 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 SNTG1Q9NSN8 517 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 SARDHQ9UL12 918 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 STAP1Q9ULZ2 295 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 SLC9A8Q9Y2E8 581 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 ZNF451Q9Y4E5 1061 aa10.38□□□□□ -0.75
CLK3-226ENST00000569406 TIMM13Q9Y5L4 95 aaPredicted RBP10.38□□□□□ -0.75
CLK3-226ENST00000569406 ZFC3H1O60293 1989 aaKnown RBP10.38□□□□□ -0.75
CLK3-226ENST00000569406 CHP2O43745 196 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 CABYRO75952 493 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 UBXN7O94888 489 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 PAK4O96013 591 aaPredicted RBP10.37□□□□□ -0.75
CLK3-226ENST00000569406 CLUP10909 449 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 PSMB4P28070 264 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 NOS2P35228 1153 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 SPRP35270 261 aaPredicted RBP10.37□□□□□ -0.75
CLK3-226ENST00000569406 MAGEA12P43365 314 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 DAOAP59103 153 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 RAB4BP61018 213 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 TSPAN5P62079 268 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 TAF1AQ15573 450 aaPredicted RBP10.37□□□□□ -0.75
CLK3-226ENST00000569406 FAM219BQ5XKK7 198 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 FBXO46Q6PJ61 603 aaPredicted RBP10.37□□□□□ -0.75
CLK3-226ENST00000569406 ZNF574Q6ZN55 896 aaPredicted RBP10.37□□□□□ -0.75
CLK3-226ENST00000569406 SHFQ7M4L6 423 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 FAM217AQ8IXS0 508 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 L3MBTL4Q8NA19 623 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 ACVR1CQ8NER5 493 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 OR52K1Q8NGK4 314 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 PPP3R2Q96LZ3 170 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 GPR61Q9BZJ8 451 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 EIF2B3Q9NR50 452 aaKnown RBP10.37□□□□□ -0.75
CLK3-226ENST00000569406 MPP6Q9NZW5 540 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 DHCR7Q9UBM7 475 aaKnown RBP10.37□□□□□ -0.75
CLK3-226ENST00000569406 MRTO4Q9UKD2 239 aaKnown RBP10.37□□□□□ -0.75
CLK3-226ENST00000569406 VWA8A3KMH1 1905 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 CDH23Q9H251 3354 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 CXorf65A6NEN9 183 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 OR6C75A6NL08 312 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 A8MVJ9 347 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 DISC1C4P0D8 188 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 B4GALT3O60512 393 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms