RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 BPIFA2Q96DR5 249 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 SIPA1Q96FS4 1042 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 CDHR1Q96JP9 859 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 CCM2Q9BSQ5 444 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 CUEDC2Q9H467 287 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 DPEP3Q9H4B8 488 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 SWAP70Q9UH65 585 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 ITGA11Q9UKX5 1188 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 COL4A4P53420 1690 aaPredicted RBP2.02□□□□□ -2.09
VPS35-207ENST00000568191 A0A0B4J203 849 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 TMEM129A0AVI4 362 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 OR5H15A6NDH6 313 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 ST8SIA3O43173 380 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 SELENOFO60613 162 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 NME6O75414 186 aaPredicted RBP2.02□□□□□ -2.09
VPS35-207ENST00000568191 PRAMEF12O95522 483 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 KRT6AP02538 564 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 KRT6BP04259 564 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 IGKV3-11P04433 115 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 GSTA2P09210 222 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 TSPY3P0CV98 308 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 TSPY8P0CW00 308 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 PGAM2P15259 253 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 ADRA2CP18825 462 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 ACKR3P25106 362 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 GDF1P27539 372 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 KRT6CP48668 564 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 SLC25A1P53007 311 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 TSPY1Q01534 308 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 KIAA0040Q15053 153 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 CDO1Q16878 200 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 TWISTNBQ3B726 338 aaPredicted RBP2.02□□□□□ -2.09
VPS35-207ENST00000568191 AGAP6Q5VW22 663 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 KHDRBS2Q5VWX1 349 aaKnown RBP2.02□□□□□ -2.09
VPS35-207ENST00000568191 SHEQ5VZ18 495 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 FAM91A1Q658Y4 838 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 KLHL10Q6JEL2 608 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 CAVIN1Q6NZI2 390 aaKnown RBP2.02□□□□□ -2.09
VPS35-207ENST00000568191 ADGRD2Q7Z7M1 963 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 ANKRD46Q86W74 232 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 NAXDQ8IW45 347 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 ICA1LQ8NDH6 482 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 FLVCR1-AS1Q8TAF5 88 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 RAB3IPQ96QF0 476 aaPredicted RBP2.02□□□□□ -2.09
VPS35-207ENST00000568191 INPP5KQ9BT40 448 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 PAXXQ9BUH6 204 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 NT5DC2Q9H857 520 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 TERF2IPQ9NYB0 399 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 ZNF319Q9P2F9 582 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 Q9UF83 564 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 NOCTQ9UK39 431 aaKnown RBP2.02□□□□□ -2.09
VPS35-207ENST00000568191 TTLL3Q9Y4R7 772 aa2.02□□□□□ -2.09
VPS35-207ENST00000568191 TDRD6O60522 2096 aaKnown RBP2.02□□□□□ -2.09
VPS35-207ENST00000568191 A0A087WV48 116 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 B4GAT1O43505 415 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 FCGR3AP08637 254 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 SNRPCP09234 159 aaKnown RBP2.01□□□□□ -2.09
VPS35-207ENST00000568191 P4HA1P13674 534 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 SRD5A2P31213 254 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 CHRNA3P32297 505 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 MAGEA9P43362 315 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 NPBWR1P48145 328 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 NAGLUP54802 743 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 WNT4P56705 351 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 FOLH1Q04609 750 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 CCL14Q16627 93 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 LYPLAL1Q5VWZ2 237 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 ZNF776Q68DI1 518 aaPredicted RBP2.01□□□□□ -2.09
VPS35-207ENST00000568191 DMKNQ6E0U4 476 aaPredicted RBP2.01□□□□□ -2.09
VPS35-207ENST00000568191 TXNRD3NBQ6F5E7 133 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 CGB2Q6NT52 195 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 ZNF730Q6ZMV8 503 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 KRTAP5-5Q701N2 237 aaPredicted RBP2.01□□□□□ -2.09
VPS35-207ENST00000568191 SLFN11Q7Z7L1 901 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 CREBRFQ8IUR6 639 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 SMYD1Q8NB12 490 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 TRAF3IP1Q8TDR0 691 aaPredicted RBP2.01□□□□□ -2.09
VPS35-207ENST00000568191 VN1R17PQ8TDU5 208 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 GANCQ8TET4 914 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 U2AF1L4Q8WU68 220 aaKnown RBP2.01□□□□□ -2.09
VPS35-207ENST00000568191 SEPT8Q92599 483 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 RIT1Q92963 219 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 BSCL2Q96G97 398 aaPredicted RBP2.01□□□□□ -2.09
VPS35-207ENST00000568191 NRBP1Q9UHY1 535 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 ANAPC5Q9UJX4 755 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 PLEKHA6Q9Y2H5 1048 aa2.01□□□□□ -2.09
VPS35-207ENST00000568191 MTF2Q9Y483 593 aaPredicted RBP2.01□□□□□ -2.09
VPS35-207ENST00000568191 CCDC162PA2VCL2 907 aa2□□□□□ -2.09
VPS35-207ENST00000568191 H0YIG0 161 aa2□□□□□ -2.09
VPS35-207ENST00000568191 H7C0S8 307 aa2□□□□□ -2.09
VPS35-207ENST00000568191 M0R296 226 aa2□□□□□ -2.09
VPS35-207ENST00000568191 P2RX6O15547 441 aa2□□□□□ -2.09
VPS35-207ENST00000568191 GPAA1O43292 621 aa2□□□□□ -2.09
VPS35-207ENST00000568191 OR6A2O95222 327 aa2□□□□□ -2.09
VPS35-207ENST00000568191 APOA4P06727 396 aa2□□□□□ -2.09
VPS35-207ENST00000568191 ZFYP08048 801 aaPredicted RBP2□□□□□ -2.09
VPS35-207ENST00000568191 MMP10P09238 476 aa2□□□□□ -2.09
VPS35-207ENST00000568191 FASP25445 335 aa2□□□□□ -2.09
VPS35-207ENST00000568191 GJB2P29033 226 aa2□□□□□ -2.09
VPS35-207ENST00000568191 TIA1P31483 386 aaKnown RBP eCLIP2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms