RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 OR2M7Q8NG81 312 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 OR7G3Q8NG95 312 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 FBXO25Q8TCJ0 367 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 SLC2A12Q8TD20 617 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 FBF1Q8TES7 1133 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 SREK1Q8WXA9 508 aaKnown RBP14.91□□□□□ -0.02
CLN3-229ENST00000567963 ANP32BQ92688 251 aaKnown RBP14.91□□□□□ -0.02
CLN3-229ENST00000567963 ANKRD9Q96BM1 317 aaPredicted RBP14.91□□□□□ -0.02
CLN3-229ENST00000567963 SPOCK3Q9BQ16 436 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 ENKD1Q9H0I2 346 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 DEFB127Q9H1M4 99 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 IGSF5Q9NSI5 407 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 OPTCQ9UBM4 332 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 SPACA6W5XKT8 324 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 AKAP9Q99996 3911 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 SUPT3HB4E1H0 165 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 K7EPI3 171 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 UBXN8O00124 270 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 SAP18O00422 153 aaKnown RBP14.9□□□□□ -0.02
CLN3-229ENST00000567963 KERAO60938 352 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 SUPT3HO75486 399 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 CPN2P22792 545 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 STX2P32856 288 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 PPIAP62937 165 aaKnown RBP14.9□□□□□ -0.02
CLN3-229ENST00000567963 TRADDQ15628 312 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 ZNF750Q32MQ0 723 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 DEPDC1Q5TB30 811 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 TMEM211Q6ICI0 200 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 PAOXQ6QHF9 649 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 CCDC25Q86WR0 208 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 ACBD4Q8NC06 268 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 C7orf57Q8NEG2 295 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 OR5L2Q8NGL0 311 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 ZNF721Q8TF20 911 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 UBTD2Q8WUN7 234 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 CMTM7Q96FZ5 175 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 SCYL1Q96KG9 808 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 TP63Q9H3D4 680 aaPredicted RBP14.9□□□□□ -0.02
CLN3-229ENST00000567963 ZDHHC11Q9H8X9 412 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 PRM3Q9NNZ6 103 aa14.9□□□□□ -0.02
CLN3-229ENST00000567963 ZNF407Q9C0G0 2248 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 ZNF354AO60765 605 aaPredicted RBP14.89□□□□□ -0.03
CLN3-229ENST00000567963 ETHE1O95571 254 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 MTHFD2P13995 350 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 EPB42P16452 691 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 POU3F2P20265 443 aaPredicted RBP14.89□□□□□ -0.03
CLN3-229ENST00000567963 CNR1P21554 472 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 SERPINB1P30740 379 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 SSTR2P30874 369 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 SSR2P43308 183 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 PLGLB1Q02325 96 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 ID2Q02363 134 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 EMC4Q5J8M3 183 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 KHDRBS2Q5VWX1 349 aaKnown RBP14.89□□□□□ -0.03
CLN3-229ENST00000567963 OR4C11Q6IEV9 310 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 GRHL2Q6ISB3 625 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 ZDHHC24Q6UX98 284 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 RTL4Q6ZR62 310 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 RGS9BPQ6ZS82 235 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 CEP128Q6ZU80 1094 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 NXNL1Q96CM4 212 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 TTTY12Q9BZ98 90 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 RAB17Q9H0T7 212 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 OR51B5Q9H339 312 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 ADGRE2Q9UHX3 823 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 ACOT9Q9Y305 439 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 A0A0G2JMM0 328 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 A0A1W2PPB8 328 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 A0A1W2PRS3 328 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 FAM166BA8MTA8 275 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 KIR3DP1A8MWS1 328 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 ACOT7O00154 380 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 FGF17O60258 216 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 GLSO94925 669 aaPredicted RBP14.89□□□□□ -0.03
CLN3-229ENST00000567963 IGLV3-21P80748 117 aaPredicted RBP14.89□□□□□ -0.03
CLN3-229ENST00000567963 GUCY2DQ02846 1103 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 SLAMF1Q13291 335 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 NAB1Q13506 487 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 NDUFAF5Q5TEU4 345 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 SLC22A16Q86VW1 577 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 OR4N5Q8IXE1 308 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 RNF175Q8N4F7 328 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 GOLM1Q8NBJ4 401 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 HUS1BQ8NHY5 278 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 RHEBL1Q8TAI7 183 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 C14orf79Q96F83 325 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 SGCZQ96LD1 299 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 FAM173AQ9BQD7 235 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 SORBS1Q9BX66 1292 aaKnown RBP14.89□□□□□ -0.03
CLN3-229ENST00000567963 RPF2Q9H7B2 306 aaKnown RBP14.89□□□□□ -0.03
CLN3-229ENST00000567963 MS4A12Q9NXJ0 267 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 COPS7AQ9UBW8 275 aa14.89□□□□□ -0.03
CLN3-229ENST00000567963 DNAJC13O75165 2243 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 SYCE1LA8MT33 242 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 G3V3Y1 287 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 COX7A2P14406 83 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 CASQ1P31415 396 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 PIK3CBP42338 1070 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 STT3AP46977 705 aa14.88□□□□□ -0.03
CLN3-229ENST00000567963 BIKQ13323 160 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms