RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 FAM219BQ5XKK7 198 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 CLEC6AQ6EIG7 209 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 SHISA5Q8N114 240 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 ZCCHC7Q8N3Z6 543 aaKnown RBP16.21■□□□□ 0.19
CLN3-217ENST00000565354 CLEC1AQ8NC01 280 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 C8orf44Q96CB5 159 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 PTCHD1Q96NR3 888 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 MRPL1Q9BYD6 325 aaKnown RBP16.21■□□□□ 0.19
CLN3-217ENST00000565354 ING2Q9H160 280 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 PRTFDC1Q9NRG1 225 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 LYARQ9NX58 379 aaKnown RBP16.21■□□□□ 0.19
CLN3-217ENST00000565354 VPS29Q9UBQ0 182 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 PHF11Q9UIL8 331 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 FBXL4Q9UKA2 621 aa16.21■□□□□ 0.19
CLN3-217ENST00000565354 G3BP2Q9UN86 482 aaKnown RBP16.21■□□□□ 0.19
CLN3-217ENST00000565354 NUP210LQ5VU65 1888 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 OR2W5A6NFC9 320 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 HMGB1P1B2RPK0 211 aaPredicted RBP16.2■□□□□ 0.18
CLN3-217ENST00000565354 SCELO95171 688 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 DHRS4L1P0CG22 281 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 TLX1P31314 330 aaPredicted RBP16.2■□□□□ 0.18
CLN3-217ENST00000565354 BUD31P41223 144 aaPredicted RBP16.2■□□□□ 0.18
CLN3-217ENST00000565354 CCL11P51671 97 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 SLC18A1P54219 525 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 BTKQ06187 659 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 ACTN3Q08043 901 aaPredicted RBP16.2■□□□□ 0.18
CLN3-217ENST00000565354 GALNT1Q10472 559 aaPredicted RBP16.2■□□□□ 0.18
CLN3-217ENST00000565354 SLC13A2Q13183 592 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 MPP2Q14168 576 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 ABRAXAS2Q15018 415 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 NSDHLQ15738 373 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 SPDYAQ5MJ70 313 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 SH2D4BQ5SQS7 431 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 CCNYL2Q5T2Q4 361 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 JMJD6Q6NYC1 403 aaPredicted RBP16.2■□□□□ 0.18
CLN3-217ENST00000565354 QSOX2Q6ZRP7 698 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 METTL4Q8N3J2 472 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 PRR7Q8TB68 274 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 AGR3Q8TD06 166 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 MAPKAP1Q9BPZ7 522 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 WDR41Q9HAD4 459 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 PRDM9Q9NQV7 894 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 LANCL2Q9NS86 450 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 MS4A12Q9NXJ0 267 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 ZNF451Q9Y4E5 1061 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 MMACHCQ9Y4U1 282 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 PCDHGB7Q9Y5F8 929 aa16.2■□□□□ 0.18
CLN3-217ENST00000565354 DIDO1Q9BTC0 2240 aaKnown RBP16.19■□□□□ 0.18
CLN3-217ENST00000565354 FBN2P35556 2912 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 NSG1A0A0A6YYJ2 146 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 TMEM114B3SHH9 223 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 EEDO75530 441 aaKnown RBP16.19■□□□□ 0.18
CLN3-217ENST00000565354 LDLRP01130 860 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 GBAP04062 536 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 KLK1P06870 262 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 BGNP21810 368 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 GRK2P25098 689 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 BSGP35613 385 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 OR4D2P58180 307 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 HMGCS1Q01581 520 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 RHAGQ02094 409 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 STX3Q13277 289 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 TTMPQ5BVD1 217 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 DCAF10Q5QP82 559 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 IRAK1BP1Q5VVH5 260 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 TMEM205Q6UW68 189 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 KIRREL2Q6UWL6 708 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 LANCL3Q6ZV70 420 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 CPEB2Q7Z5Q1 589 aaKnown RBP16.19■□□□□ 0.18
CLN3-217ENST00000565354 GPR180Q86V85 440 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 TRIM42Q8IWZ5 723 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 ZNF595Q8IYB9 648 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 CLYBLQ8N0X4 340 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 C1orf52Q8N6N3 182 aaKnown RBP16.19■□□□□ 0.18
CLN3-217ENST00000565354 Q8NA96 180 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 PLPP5Q8NEB5 264 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 OR11G2Q8NGC1 345 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 TSLPQ969D9 159 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 CSF3RQ99062 836 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 SH3GL2Q99962 352 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 ACPTQ9BZG2 426 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 DDX31Q9H8H2 851 aaKnown RBP16.19■□□□□ 0.18
CLN3-217ENST00000565354 ATP13A2Q9NQ11 1180 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 ERRFI1Q9UJM3 462 aaPredicted RBP16.19■□□□□ 0.18
CLN3-217ENST00000565354 ADAM29Q9UKF5 820 aa16.19■□□□□ 0.18
CLN3-217ENST00000565354 A0A0A6YYD5 115 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 SLC28A1O00337 649 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 DPM1O60762 260 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 GUCY1B2O75343 617 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 HPP00738 406 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 FAM58BPP0C7Q3 252 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 CHN1P15882 459 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 MAOAP21397 527 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 HSD17B7P56937 341 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 ABCE1P61221 599 aaKnown RBP16.18■□□□□ 0.18
CLN3-217ENST00000565354 BTG2P78543 158 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 ACSM2AQ08AH3 577 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 SPIN4Q56A73 249 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 ACSM2BQ68CK6 577 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 NDUFAF7Q7L592 441 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms