RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 POP4O95707 220 aaKnown RBP12.59□□□□□ -0.39
CLN3-210ENST00000563874 IL3P08700 152 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 TNNI3P19429 210 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 OPRD1P41143 372 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 RORCP51449 518 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 HMGA2P52926 109 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 TEKQ02763 1124 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 ZNF33BQ06732 778 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 SLX4IPQ5VYV7 408 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 ZNF770Q6IQ21 691 aaPredicted RBP12.59□□□□□ -0.39
CLN3-210ENST00000563874 TMIGD1Q6UXZ0 262 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 CEACAM20Q6UY09 585 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 DEF8Q6ZN54 512 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 DEFB128Q7Z7B8 93 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 GALNT12Q8IXK2 581 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 CRIPAKQ8N1N5 446 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 TCEANCQ8N8B7 351 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 OR56A3Q8NH54 315 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 GOT1L1Q8NHS2 421 aaPredicted RBP12.59□□□□□ -0.39
CLN3-210ENST00000563874 CHAC2Q8WUX2 184 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 FYTTD1Q96QD9 318 aaKnown RBP12.59□□□□□ -0.39
CLN3-210ENST00000563874 SLC6A16Q9GZN6 736 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 ANGPT4Q9Y264 503 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 KLHL18O94889 574 aa12.58□□□□□ -0.39
CLN3-210ENST00000563874 CDRT1O95170 752 aa12.58□□□□□ -0.39
CLN3-210ENST00000563874 PCBP3P57721 371 aaKnown RBP12.58□□□□□ -0.39
CLN3-210ENST00000563874 RUNX1T1Q06455 604 aa12.58□□□□□ -0.39
CLN3-210ENST00000563874 ZNF630Q2M218 657 aaPredicted RBP12.58□□□□□ -0.39
CLN3-210ENST00000563874 FAM131AQ6UXB0 335 aa12.58□□□□□ -0.39
CLN3-210ENST00000563874 GDPD4Q6W3E5 623 aa12.58□□□□□ -0.39
CLN3-210ENST00000563874 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.58□□□□□ -0.39
CLN3-210ENST00000563874 HMGN2P46Q86SG4 172 aa12.58□□□□□ -0.39
CLN3-210ENST00000563874 KRT73Q86Y46 540 aa12.58□□□□□ -0.39
CLN3-210ENST00000563874 ASCC1Q8N9N2 400 aaKnown RBP12.58□□□□□ -0.39
CLN3-210ENST00000563874 SORCS1Q8WY21 1168 aa12.58□□□□□ -0.39
CLN3-210ENST00000563874 SLC6A18Q96N87 628 aa12.58□□□□□ -0.39
CLN3-210ENST00000563874 TMEM246Q9BRR3 403 aa12.58□□□□□ -0.39
CLN3-210ENST00000563874 C3orf14Q9HBI5 128 aa12.58□□□□□ -0.39
CLN3-210ENST00000563874 ABCB9Q9NP78 766 aa12.58□□□□□ -0.39
CLN3-210ENST00000563874 MRPL17Q9NRX2 175 aaKnown RBP12.58□□□□□ -0.39
CLN3-210ENST00000563874 C5AR2Q9P296 337 aa12.58□□□□□ -0.39
CLN3-210ENST00000563874 LSM2Q9Y333 95 aaKnown RBP12.58□□□□□ -0.39
CLN3-210ENST00000563874 HELZP42694 1942 aaKnown RBP12.58□□□□□ -0.4
CLN3-210ENST00000563874 ALPK3Q96L96 1907 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 FAM172BPA6NC97 362 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 ZNF197O14709 1029 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 IFNA14P01570 189 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 ARAFP10398 606 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 CSTF2P33240 577 aaKnown RBP eCLIP12.58□□□□□ -0.4
CLN3-210ENST00000563874 DSTNP60981 165 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 TRIM48Q8IWZ4 208 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 OR9Q1Q8NGQ5 310 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 KLHL6Q8WZ60 621 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 ZFYVE19Q96K21 471 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 UCK2Q9BZX2 261 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 CXorf36Q9H7Y0 433 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 SLC25A19Q9HC21 320 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 MIEF1Q9NQG6 463 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 NUFIP1Q9UHK0 495 aaKnown RBP12.58□□□□□ -0.4
CLN3-210ENST00000563874 HS3ST2Q9Y278 367 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 TRAPPC4Q9Y296 219 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 YARS2Q9Y2Z4 477 aaKnown RBP12.58□□□□□ -0.4
CLN3-210ENST00000563874 AP1M2Q9Y6Q5 423 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 MPZL2O60487 215 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 NPPBP16860 134 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 PSPHP78330 225 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 ZNF91Q05481 1191 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 CLPPQ16740 277 aaPredicted RBP12.58□□□□□ -0.4
CLN3-210ENST00000563874 FAM214AQ32MH5 1076 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 TMEM220Q6QAJ8 160 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 TMEM25Q86YD3 366 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 RASGRP3Q8IV61 690 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 TMEM80Q96HE8 168 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 ACAT2Q9BWD1 397 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 TSSK6Q9BXA6 273 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 PRRG3Q9BZD7 231 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 SRRQ9GZT4 340 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 ABCG4Q9H172 646 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 RANGRFQ9HD47 186 aaPredicted RBP12.58□□□□□ -0.4
CLN3-210ENST00000563874 DMRT3Q9NQL9 472 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 ASAH2Q9NR71 780 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 TVP23BQ9NYZ1 205 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 REV1Q9UBZ9 1251 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 TMCC3Q9ULS5 477 aa12.58□□□□□ -0.4
CLN3-210ENST00000563874 DOCK6Q96HP0 2047 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 A0A1W2PRU2 124 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 PIPSLA2A3N6 862 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 ANKDD1BA6NHY2 528 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 C5orf58C9J3I9 102 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 HOXA2O43364 376 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 AP2A2O94973 939 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 OLFM2O95897 454 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 LSM11P83369 360 aaKnown RBP eCLIP12.57□□□□□ -0.4
CLN3-210ENST00000563874 HNRNPA0Q13151 305 aaKnown RBP12.57□□□□□ -0.4
CLN3-210ENST00000563874 TOR1AIP1Q5JTV8 583 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 ZDHHC20Q5W0Z9 365 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 TPGS2Q68CL5 300 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 C22orf42Q6IC83 251 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 CASP12Q6UXS9 341 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 C11orf74Q86VG3 221 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms