RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 ILKAPQ9H0C8 392 aaPredicted RBP9.19□□□□□ -0.94
CLK3-208ENST00000562626 LRTM1Q9HBL6 345 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 MED4Q9NPJ6 270 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 PRTFDC1Q9NRG1 225 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 C14orf105Q9NVL8 296 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 THAP1Q9NVV9 213 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 SIRT5Q9NXA8 310 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 P4HTMQ9NXG6 502 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 MCM8Q9UJA3 840 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 NXT1Q9UKK6 140 aaKnown RBP9.19□□□□□ -0.94
CLK3-208ENST00000562626 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.19□□□□□ -0.94
CLK3-208ENST00000562626 BSNQ9UPA5 3926 aa9.19□□□□□ -0.94
CLK3-208ENST00000562626 IGSF10Q6WRI0 2623 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 LOC102723996A0A087X1L8 192 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 TCRBV16S1A1N1A0A5B0 115 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 A8MUA0 341 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 SLC28A1O00337 649 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 PEX11AO75192 247 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 SEC22BO75396 215 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 IL3P08700 152 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 FREM3P0C091 2139 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 PRR35P0CG20 571 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 C8orf89P0DMQ9 161 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 SDC1P18827 310 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 TSFMP43897 325 aaKnown RBP9.18□□□□□ -0.94
CLK3-208ENST00000562626 MAPK12P53778 367 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 GYS2P54840 703 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 SKP1P63208 163 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 ACSM2AQ08AH3 577 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 TBR1Q16650 682 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 IMPG1Q17R60 797 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 LINC00303Q3SY05 128 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 CRTC2Q53ET0 693 aaPredicted RBP9.18□□□□□ -0.94
CLK3-208ENST00000562626 C6orf136Q5SQH8 315 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 ATG16L1Q676U5 607 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 ACSM2BQ68CK6 577 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 NOXRED1Q6NXP6 359 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 GALNT18Q6P9A2 607 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 QSOX2Q6ZRP7 698 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 CNTRLQ7Z7A1 2325 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 PLPP5Q8NEB5 264 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 CLHC1Q8NHS4 586 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 DYDC1Q8WWB3 177 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 EXTL1Q92935 676 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 C19orf60Q96EN9 201 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 MAGEB18Q96M61 343 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 PTCHD1Q96NR3 888 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 CENPKQ9BS16 269 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 EFHD1Q9BUP0 239 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 ROGDIQ9GZN7 287 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 PIEZO2Q9H5I5 2752 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 PCNX3Q9H6A9 2034 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 WDR55Q9H6Y2 383 aaPredicted RBP9.18□□□□□ -0.94
CLK3-208ENST00000562626 CLK4Q9HAZ1 481 aaKnown RBP9.18□□□□□ -0.94
CLK3-208ENST00000562626 PRDM9Q9NQV7 894 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 SEMA3GQ9NS98 782 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 C1orf109Q9NX04 203 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 LYARQ9NX58 379 aaKnown RBP9.18□□□□□ -0.94
CLK3-208ENST00000562626 AHSPQ9NZD4 102 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 BAIAP2L1Q9UHR4 511 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 FBXL4Q9UKA2 621 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 ADAM29Q9UKF5 820 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 CES1P1Q9UKY3 287 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 KCNMB2Q9Y691 235 aa9.18□□□□□ -0.94
CLK3-208ENST00000562626 A0A088AWK7 358 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 IGHV1-45A0A0A0MS14 117 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 GOLGA8QA0A0J9YX86 632 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 A0A1W2PQ72 361 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 GOLGA8OA6NCC3 632 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 EIF4E1BA6NMX2 242 aaKnown RBP9.17□□□□□ -0.94
CLK3-208ENST00000562626 TCP11X1B4DZS4 312 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 GOLGA8NF8WBI6 632 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 K7EM74 188 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 HRKO00198 91 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 PSMD12O00232 456 aaPredicted RBP9.17□□□□□ -0.94
CLK3-208ENST00000562626 RGS14O43566 566 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 PRMT3O60678 531 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 SEC24DO94855 1032 aaPredicted RBP9.17□□□□□ -0.94
CLK3-208ENST00000562626 ANXA4P09525 319 aaPredicted RBP9.17□□□□□ -0.94
CLK3-208ENST00000562626 ALDOCP09972 364 aaKnown RBP9.17□□□□□ -0.94
CLK3-208ENST00000562626 NR2F6P10588 404 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 ACPPP15309 386 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 ZNF10P21506 573 aaPredicted RBP9.17□□□□□ -0.94
CLK3-208ENST00000562626 SOX18P35713 384 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 UCNP55089 124 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 TAS2R50P59544 299 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 IGLV3-21P80748 117 aaPredicted RBP9.17□□□□□ -0.94
CLK3-208ENST00000562626 FOLH1Q04609 750 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 SLC13A2Q13183 592 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 NSDHLQ15738 373 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 SLC9B1Q4ZJI4 515 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 SPIN4Q56A73 249 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 SFT2D3Q587I9 215 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 NDUFAF5Q5TEU4 345 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 FAM71E1Q6IPT2 247 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 ANKRD26P1Q6NSI1 321 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 CGB2Q6NT52 195 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 NIPAL1Q6NVV3 410 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 RGS9BPQ6ZS82 235 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 CPEB2Q7Z5Q1 589 aaKnown RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms