RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 PIGGQ5H8A4 983 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 NANOGP8Q6NSW7 305 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 NIPAL1Q6NVV3 410 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 DNAJC14Q6Y2X3 702 aaPredicted RBP10.61□□□□□ -0.71
USP3-218ENST00000560202 SLC15A3Q8IY34 581 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 KIAA2013Q8IYS2 634 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 FBXW8Q8N3Y1 598 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 NATD1Q8N6N6 113 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 TTC29Q8NA56 475 aaPredicted RBP10.61□□□□□ -0.71
USP3-218ENST00000560202 RCBTB1Q8NDN9 531 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 FAM13CQ8NE31 585 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 OR9A4Q8NGU2 314 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 OR1L3Q8NH93 324 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 B4GALNT2Q8NHY0 566 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 CCDC74BQ96LY2 380 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 CGREF1Q99674 301 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 NPLQ9BXD5 320 aaPredicted RBP10.61□□□□□ -0.71
USP3-218ENST00000560202 NANOGQ9H9S0 305 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 LYRM4Q9HD34 91 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 FGF21Q9NSA1 209 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 MS4A12Q9NXJ0 267 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 SLC25A37Q9NYZ2 338 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 VAPAQ9P0L0 249 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 C5AR2Q9P296 337 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 ABCD2Q9UBJ2 740 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 SLC7A8Q9UHI5 535 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 PACSIN3Q9UKS6 424 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 GOLGA4Q13439 2230 aaKnown RBP10.61□□□□□ -0.71
USP3-218ENST00000560202 WDR87Q6ZQQ6 2873 aa10.61□□□□□ -0.71
USP3-218ENST00000560202 TRBV5-3A0A0A0MS03 114 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 A0A0A6YYC8 382 aaPredicted RBP10.6□□□□□ -0.71
USP3-218ENST00000560202 C15orf38-AP3S2A0A0A6YYH1 394 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 A0A1W2PRB8 838 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 GLOD5A6NK44 160 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 C4orf47A7E2U8 309 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 WASHC1A8K0Z3 465 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 D6RAR5 112 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 I3L1I5 382 aaPredicted RBP10.6□□□□□ -0.71
USP3-218ENST00000560202 PGRMC2O15173 223 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 FOXS1O43638 330 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 CBFA2T3O75081 653 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 GSNP06396 782 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 NR2F6P10588 404 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 HOXB9P17482 250 aaPredicted RBP10.6□□□□□ -0.71
USP3-218ENST00000560202 CPN2P22792 545 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 BUD31P41223 144 aaPredicted RBP10.6□□□□□ -0.71
USP3-218ENST00000560202 MAGEA8P43361 318 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 SKP1P63208 163 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 TNFRSF17Q02223 184 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 ACY1Q03154 408 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 CEACAM7Q14002 265 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 SPIDRQ14159 915 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 FAM214AQ32MH5 1076 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 GTDC1Q4AE62 458 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 AASDHQ4L235 1098 aaPredicted RBP10.6□□□□□ -0.71
USP3-218ENST00000560202 RABL3Q5HYI8 236 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 FAM180BQ6P0A1 224 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 SLC48A1Q6P1K1 146 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 ARPINQ7Z6K5 226 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 HPS6Q86YV9 775 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 SLITRK4Q8IW52 837 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 MSRB3Q8IXL7 192 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 RNF148Q8N7C7 305 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 OR5T3Q8NGG3 340 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 TMEM125Q96AQ2 219 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 EXOSC8Q96B26 276 aaKnown RBP10.6□□□□□ -0.71
USP3-218ENST00000560202 PPP1R14BQ96C90 147 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 ZNF501Q96CX3 271 aaPredicted RBP10.6□□□□□ -0.71
USP3-218ENST00000560202 GBP5Q96PP8 586 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 TRIM8Q9BZR9 551 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 FANCEQ9HB96 536 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 SLC6A13Q9NSD5 602 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 CMTM6Q9NX76 183 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.6□□□□□ -0.71
USP3-218ENST00000560202 SERTAD3Q9UJW9 196 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 UTS2RQ9UKP6 389 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 CES1P1Q9UKY3 287 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 ERVK-11Q9UQG0 969 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 HCN4Q9Y3Q4 1203 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 NEUROG3Q9Y4Z2 214 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 PCDHB14Q9Y5E9 798 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 SPACA6W5XKT8 324 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 CACNA1HO95180 2353 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 A8MUI8 341 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 NME4O00746 187 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 PDPK1O15530 556 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 RDH16O75452 317 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 SORBS2O94875 1100 aaKnown RBP10.6□□□□□ -0.71
USP3-218ENST00000560202 NSA2O95478 260 aaKnown RBP10.6□□□□□ -0.71
USP3-218ENST00000560202 C6orf47O95873 294 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 TGM1P22735 817 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 TLX1P31314 330 aaPredicted RBP10.6□□□□□ -0.71
USP3-218ENST00000560202 ITGA1P56199 1179 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 PCBP4P57723 403 aaKnown RBP10.6□□□□□ -0.71
USP3-218ENST00000560202 RUNDC3AQ59EK9 446 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 SAMD4BQ5PRF9 694 aaKnown RBP10.6□□□□□ -0.71
USP3-218ENST00000560202 PHF19Q5T6S3 580 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 ZNF621Q6ZSS3 439 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 GPR135Q8IZ08 494 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 CA13Q8N1Q1 262 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms