RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 OR4C11Q6IEV9 310 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 IL20RBQ6UXL0 311 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 Q6ZPB1 254 aaPredicted RBP16.47■□□□□ 0.23
HDDC3-205ENST00000559898 OR52B6Q8NGF0 335 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 OR52N2Q8NGI0 321 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 SLC2A12Q8TD20 617 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 ZNF721Q8TF20 911 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 SLC44A1Q8WWI5 657 aa16.47■□□□□ 0.23
HDDC3-205ENST00000559898 MTFMTQ96DP5 389 aaKnown RBP16.47■□□□□ 0.23
HDDC3-205ENST00000559898 A0A088AWK7 358 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 ADAM10O14672 748 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 ZFAND5O76080 213 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 GBAP04062 536 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 SBK3P0C264 359 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 ZNF24P17028 368 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 ZNF10P21506 573 aaPredicted RBP16.46■□□□□ 0.23
HDDC3-205ENST00000559898 SERPINB8P50452 374 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 ALDH18A1P54886 795 aaKnown RBP16.46■□□□□ 0.23
HDDC3-205ENST00000559898 STX4Q12846 297 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 GTF2H2Q13888 395 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 CPSF6Q16630 551 aaKnown RBP eCLIP16.46■□□□□ 0.23
HDDC3-205ENST00000559898 WHAMMP3Q1A5X7 153 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 FAM83EQ2M2I3 478 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 AP5B1Q2VPB7 878 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 GTF2H2CQ6P1K8 395 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 TMEM156Q8N614 296 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 HORMAD2Q8N7B1 307 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 PTGR2Q8N8N7 351 aaPredicted RBP16.46■□□□□ 0.23
HDDC3-205ENST00000559898 WDR20Q8TBZ3 569 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 PHF21BQ96EK2 531 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 CMTM7Q96FZ5 175 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 RASL10BQ96S79 203 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 FUT8Q9BYC5 575 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 IPPKQ9H8X2 491 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 ZBTB26Q9HCK0 441 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 MRPS33Q9Y291 106 aaKnown RBP16.46■□□□□ 0.23
HDDC3-205ENST00000559898 LRBAP50851 2863 aa16.46■□□□□ 0.23
HDDC3-205ENST00000559898 CSMD1Q96PZ7 3565 aa16.46■□□□□ 0.22
HDDC3-205ENST00000559898 GLOD5A6NK44 160 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 PPP6CO00743 305 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 PDE9AO76083 593 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 SNRPB2P08579 225 aaKnown RBP16.45■□□□□ 0.22
HDDC3-205ENST00000559898 TNNI3P19429 210 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 BSGP35613 385 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 SSR4P51571 173 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 IGLV3-21P80748 117 aaPredicted RBP16.45■□□□□ 0.22
HDDC3-205ENST00000559898 RBPJQ06330 500 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 TGM3Q08188 693 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 PCBP2Q15366 365 aaKnown RBP eCLIP16.45■□□□□ 0.22
HDDC3-205ENST00000559898 TMEM35AQ53FP2 167 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 CMPK2Q5EBM0 449 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 DOLPP1Q86YN1 238 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 TMEM132CQ8N3T6 1108 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 AGAP11Q8TF27 550 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 DCAKDQ8WVC6 231 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 MARVELD3Q96A59 401 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 MAGED4Q96JG8 741 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 PAFAH2Q99487 392 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 ACTR8Q9H981 624 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 MYOTQ9UBF9 498 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 MEMO1Q9Y316 297 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 ASB4Q9Y574 426 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 ANGPTL3Q9Y5C1 460 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 CLCA3PQ9Y6N3 262 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 ZNF407Q9C0G0 2248 aa16.45■□□□□ 0.22
HDDC3-205ENST00000559898 A0A1B0GTH9 108 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 SYCE1LA8MT33 242 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 POC1B-GALNT4F8VUJ3 575 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 CDC40O60508 579 aaKnown RBP eCLIP16.44■□□□□ 0.22
HDDC3-205ENST00000559898 TSPAN8P19075 237 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 GCAP28676 217 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 RNF4P78317 190 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 FOLH1Q04609 750 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 KRTCAP3Q53RY4 240 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 LIPJQ5W064 366 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 MRM1Q6IN84 353 aaKnown RBP16.44■□□□□ 0.22
HDDC3-205ENST00000559898 HSDL2Q6YN16 418 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 CHSY3Q70JA7 882 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 RELL1Q8IUW5 271 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 C9orf40Q8IXQ3 194 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 SRRM1Q8IYB3 904 aaKnown RBP16.44■□□□□ 0.22
HDDC3-205ENST00000559898 RPRMLQ8N4K4 120 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 FAM98AQ8NCA5 519 aaKnown RBP16.44■□□□□ 0.22
HDDC3-205ENST00000559898 MORN4Q8NDC4 146 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 PSD4Q8NDX1 1056 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 OR14A16Q8NHC5 309 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 UBE2E3Q969T4 207 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 ISL2Q96A47 359 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 TMEM125Q96AQ2 219 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 RGMAQ96B86 450 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 SCYL1Q96KG9 808 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 CCDC77Q9BR77 488 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 DEFB127Q9H1M4 99 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 NOL11Q9H8H0 719 aaKnown RBP16.44■□□□□ 0.22
HDDC3-205ENST00000559898 XPR1Q9UBH6 696 aa16.44■□□□□ 0.22
HDDC3-205ENST00000559898 KLF13Q9Y2Y9 288 aaPredicted RBP16.44■□□□□ 0.22
HDDC3-205ENST00000559898 YARS2Q9Y2Z4 477 aaKnown RBP16.44■□□□□ 0.22
HDDC3-205ENST00000559898 A0A0A6YYD5 115 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 A0A1W2PR48 441 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 FAM166BA8MTA8 275 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms